RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 LIN37Q96GY3 246 aaPredicted RBP16.27■□□□□ 0.2
HMGA1-205ENST00000447654 MED29Q9NX70 200 aa16.27■□□□□ 0.2
HMGA1-205ENST00000447654 A0A1B0GX78 115 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 A0A1W2PS18 150 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 PDCD6O75340 191 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 C1QTNF9P0C862 333 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 MALLQ13021 153 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 ZNF818PQ6ZRF7 136 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 GAPTQ8N292 157 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 BORCS7Q96B45 105 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 SIT1Q9Y3P8 196 aa16.27■□□□□ 0.19
HMGA1-205ENST00000447654 COL5A1P20908 1838 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-205ENST00000447654 LY6G6EA0A0G2JKS1 128 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 GALR2O43603 387 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-205ENST00000447654 LGALS4P56470 323 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 GNB1P62873 340 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 NHLH1Q02575 133 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 WDR74Q6RFH5 385 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-205ENST00000447654 PIGTQ969N2 578 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 SLC25A22Q9H936 323 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 U3KQA8 63 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 SRD5A2P31213 254 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 RPS18P62269 152 aaKnown RBP16.26■□□□□ 0.19
HMGA1-205ENST00000447654 RBPJQ06330 500 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 ACSM6Q6P461 480 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 GUSBP11Q6P575 273 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 FAM180AQ6UWF9 173 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 OR10P1Q8NGE3 313 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 PIGLQ9Y2B2 252 aa16.26■□□□□ 0.19
HMGA1-205ENST00000447654 ZDBF2Q9HCK1 2354 aa16.25■□□□□ 0.19
HMGA1-205ENST00000447654 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.25■□□□□ 0.19
HMGA1-205ENST00000447654 TNFSF12O43508 249 aa16.25■□□□□ 0.19
HMGA1-205ENST00000447654 TUSC2O75896 110 aa16.25■□□□□ 0.19
HMGA1-205ENST00000447654 PAX2Q02962 417 aa16.25■□□□□ 0.19
HMGA1-205ENST00000447654 PSG3Q16557 428 aa16.25■□□□□ 0.19
HMGA1-205ENST00000447654 AHRRA9YTQ3 701 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 F2Z2F3 143 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 H0YJW9 148 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 IGHG1P01857 330 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 IL11P20809 199 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 CLRN1P58418 232 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 SLC38A11Q08AI6 406 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 HIST3H3Q16695 136 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 DCAF12Q5T6F0 453 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 CDCP2Q5VXM1 449 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 SLC25A47Q6Q0C1 308 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 VASH2Q86V25 355 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 ZNF441Q8N8Z8 693 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 OR10V1Q8NGI7 309 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 GATAD1Q8WUU5 269 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 LY96Q9Y6Y9 160 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 A0A1W2PQM1 296 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 LRP5LA4QPB2 252 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 G3V4G9 280 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 RBFOX2O43251 390 aaKnown RBP eCLIP16.24■□□□□ 0.191e-11■■□□□ 12.4
HMGA1-205ENST00000447654 F2RP25116 425 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 CNN3Q15417 329 aaKnown RBP16.24■□□□□ 0.19
HMGA1-205ENST00000447654 C12orf54Q6X4T0 127 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 OSR2Q8N2R0 312 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 THAP3Q8WTV1 239 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-205ENST00000447654 ST8SIA1Q92185 356 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 ALKBH4Q9NXW9 302 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 SHANK1Q9Y566 2161 aa16.24■□□□□ 0.19
HMGA1-205ENST00000447654 FAM90A26D6RGX4 464 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 RER1O15258 196 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 NXPH3O95157 252 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 CA2P00918 260 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 ZNF83P51522 516 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 GFRA1P56159 465 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 PSG4Q00888 419 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 PLCXD2Q0VAA5 305 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 QTRT1Q9BXR0 403 aaKnown RBP16.23■□□□□ 0.19
HMGA1-205ENST00000447654 SMPXQ9UHP9 88 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 UBE2L5PA0A1B0GUS4 154 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 SLC22A20A6NK97 555 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 SNURFLB1AK76 121 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 CDIPTO14735 213 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 ANOS1P23352 680 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 LHFPL2Q6ZUX7 228 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 OR2M3Q8NG83 312 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 RAB1CQ92928 201 aa16.23■□□□□ 0.19
HMGA1-205ENST00000447654 CD5LO43866 347 aa16.22■□□□□ 0.19
HMGA1-205ENST00000447654 ZNF324BQ6AW86 544 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-205ENST00000447654 WNT10AQ9GZT5 417 aa16.22■□□□□ 0.19
HMGA1-205ENST00000447654 PEF1Q9UBV8 284 aaKnown RBP16.22■□□□□ 0.19
HMGA1-205ENST00000447654 CD300LBA8K4G0 201 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 PGLYRP1O75594 196 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-205ENST00000447654 NDUFB4O95168 129 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 THBS3P49746 956 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 TRIP6Q15654 476 aaKnown RBP16.21■□□□□ 0.19
HMGA1-205ENST00000447654 KRTCAP3Q53RY4 240 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 HLA-DQA1Q5Y7H0 255 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 TMEM14EPQ6UXP3 125 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 SCCPDHQ8NBX0 429 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 CPT1CQ8TCG5 803 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 TMEM147Q9BVK8 224 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 A0A0G2JRQ6 117 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 C2orf72A6NCS6 295 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 E9PLN8 166 aa16.21■□□□□ 0.19
HMGA1-205ENST00000447654 OR7C2O60412 319 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms