RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 FOXA2Q9Y261 457 aaPredicted RBP16.07■□□□□ 0.16
SDC1-205ENST00000447124 SORL1Q92673 2214 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 A0A075B6Q4 140 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 IGKV1D-8A0A087WSZ0 117 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 TRBV6-7A0A0A0MS04 114 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 SMIM30A4D0T7 59 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 BET1O15155 118 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 MRPS14O60783 128 aaKnown RBP16.06■□□□□ 0.16
SDC1-205ENST00000447124 ATP6V1G2O95670 118 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 CA2P00918 260 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 HIST1H1DP16402 221 aaKnown RBP16.06■□□□□ 0.16
SDC1-205ENST00000447124 GALP22466 123 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 MYL9P24844 172 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 ECI1P42126 302 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 SERPINB10P48595 397 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 GABARAPL2P60520 117 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 UBE2UQ5VVX9 321 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 LFNGQ8NES3 379 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 SDHAF2Q9NX18 166 aa16.06■□□□□ 0.16
SDC1-205ENST00000447124 ARPC1BO15143 372 aaKnown RBP16.05■□□□□ 0.16
SDC1-205ENST00000447124 IGLV2-23P01705 113 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 OR8U8P0C7N1 319 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 SSBP2P81877 361 aaPredicted RBP16.05■□□□□ 0.16
SDC1-205ENST00000447124 CD69Q07108 199 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 TMEM267Q0VDI3 215 aaPredicted RBP16.05■□□□□ 0.16
SDC1-205ENST00000447124 AKIRIN2Q53H80 203 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 UNQ5815/PRO19632Q6UWF5 114 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 PDPNQ86YL7 162 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.05■□□□□ 0.16
SDC1-205ENST00000447124 ABHD5Q8WTS1 349 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 FLYWCH2Q96CP2 140 aaKnown RBP16.05■□□□□ 0.16
SDC1-205ENST00000447124 TSNAXQ99598 290 aaKnown RBP16.05■□□□□ 0.16
SDC1-205ENST00000447124 SLC35D1Q9NTN3 355 aa16.05■□□□□ 0.16
SDC1-205ENST00000447124 SLC25A17O43808 307 aa16.04■□□□□ 0.16
SDC1-205ENST00000447124 CRYGBP07316 175 aa16.04■□□□□ 0.16
SDC1-205ENST00000447124 MRPS15P82914 257 aaKnown RBP16.04■□□□□ 0.16
SDC1-205ENST00000447124 TCTEX1D1Q8N7M0 179 aa16.04■□□□□ 0.16
SDC1-205ENST00000447124 OR10J5Q8NHC4 309 aa16.04■□□□□ 0.16
SDC1-205ENST00000447124 DLX4Q92988 240 aaPredicted RBP16.04■□□□□ 0.16
SDC1-205ENST00000447124 MS4A10Q96PG2 267 aa16.04■□□□□ 0.16
SDC1-205ENST00000447124 OR2D2Q9H210 308 aa16.04■□□□□ 0.16
SDC1-205ENST00000447124 TXNL4BQ9NX01 149 aaKnown RBP16.04■□□□□ 0.16
SDC1-205ENST00000447124 SPDEFO95238 335 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 GADD45AP24522 165 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 FGF9P31371 208 aaPredicted RBP16.03■□□□□ 0.16
SDC1-205ENST00000447124 SLURP1P55000 103 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 PJVKQ0ZLH3 352 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 FXYD3Q14802 87 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 ACTBL2Q562R1 376 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 RHOVQ96L33 236 aa16.03■□□□□ 0.16
SDC1-205ENST00000447124 IGHV4OR15-8A0A075B7B6 117 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 A0A087WW49 117 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 METTL21EPA6NDL7 271 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 SRRM4A7MD48 611 aaKnown RBP16.02■□□□□ 0.16
SDC1-205ENST00000447124 IGHV3-11P01762 117 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 APOA2P02652 100 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 LGALS1P09382 135 aaKnown RBP16.02■□□□□ 0.16
SDC1-205ENST00000447124 PSMB9P28065 219 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 ARFRP1Q13795 201 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 SRSF7Q16629 238 aaKnown RBP eCLIP16.02■□□□□ 0.16
SDC1-205ENST00000447124 CDNFQ49AH0 187 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 Q6ZS49 121 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 ATG5Q9H1Y0 275 aa16.02■□□□□ 0.16
SDC1-205ENST00000447124 KMT2CQ8NEZ4 4911 aaKnown RBP16.02■□□□□ 0.15
SDC1-205ENST00000447124 TNCP24821 2201 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 NOTOA8MTQ0 251 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 LINC01619G3V211 115 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 OVOL1O14753 267 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 DIRAS3O95661 229 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 MRGPRG-AS1Q2M3A8 158 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 H1FOOQ8IZA3 346 aaPredicted RBP16.01■□□□□ 0.15
SDC1-205ENST00000447124 BVESQ8NE79 360 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 ARPC1AQ92747 370 aa16.01■□□□□ 0.15
SDC1-205ENST00000447124 HUWE1Q7Z6Z7 4374 aaKnown RBP16■□□□□ 0.15
SDC1-205ENST00000447124 LGALS7P47929 136 aa16■□□□□ 0.15
SDC1-205ENST00000447124 INSL3P51460 131 aa16■□□□□ 0.15
SDC1-205ENST00000447124 TMEM177Q53S58 311 aa16■□□□□ 0.15
SDC1-205ENST00000447124 OR5T1Q8NG75 326 aa16■□□□□ 0.15
SDC1-205ENST00000447124 GRPEL2Q8TAA5 225 aa16■□□□□ 0.15
SDC1-205ENST00000447124 YTHDF1Q9BYJ9 559 aaKnown RBP16■□□□□ 0.15
SDC1-205ENST00000447124 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16■□□□□ 0.15
SDC1-205ENST00000447124 STUB1Q9UNE7 303 aa16■□□□□ 0.15
SDC1-205ENST00000447124 ZNF256Q9Y2P7 627 aaPredicted RBP16■□□□□ 0.15
SDC1-205ENST00000447124 TALDO1P37837 337 aa15.99■□□□□ 0.15
SDC1-205ENST00000447124 DCTN2Q13561 401 aaKnown RBP15.99■□□□□ 0.15
SDC1-205ENST00000447124 PYHIN1Q6K0P9 492 aa15.99■□□□□ 0.15
SDC1-205ENST00000447124 DDB2Q92466 427 aa15.99■□□□□ 0.15
SDC1-205ENST00000447124 OR51E2Q9H255 320 aa15.99■□□□□ 0.15
SDC1-205ENST00000447124 LINC00473A8K010 186 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 J3QRK9 145 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 HSPB1P04792 205 aaKnown RBP15.98■□□□□ 0.15
SDC1-205ENST00000447124 CLEC2LP0C7M8 214 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 DUTP33316 252 aaKnown RBP15.98■□□□□ 0.15
SDC1-205ENST00000447124 TPPP2P59282 170 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 ZNF429Q86V71 674 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 HARBI1Q96MB7 349 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 GINS4Q9BRT9 223 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 ST6GALNAC5Q9BVH7 336 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 RNF167Q9H6Y7 350 aa15.98■□□□□ 0.15
SDC1-205ENST00000447124 RBM7Q9Y580 266 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms