RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 AVPP01185 164 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 IFNA2P01563 188 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 RPA2P15927 270 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 PI3P19957 117 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 F2RP25116 425 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 CD1BP29016 333 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 DUTP33316 252 aaKnown RBP8.18□□□□□ -1.1
CD44-207ENST00000425428 RAG2P55895 527 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 LRRC75BQ2VPJ9 315 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 LHFPL4Q7Z7J7 247 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 PDPNQ86YL7 162 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 OR2T10Q8NGZ9 312 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 COQ8AQ8NI60 647 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 ZNF418Q8TF45 676 aaPredicted RBP8.18□□□□□ -1.1
CD44-207ENST00000425428 FLYWCH2Q96CP2 140 aaKnown RBP8.18□□□□□ -1.1
CD44-207ENST00000425428 JMJD8Q96S16 334 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 TEX15Q9BXT5 2789 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 OCEL1Q9H607 264 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 NAA60Q9H7X0 242 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 FAM212BQ9NTI7 297 aaPredicted RBP8.18□□□□□ -1.1
CD44-207ENST00000425428 C1RLQ9NZP8 487 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 KIAA1456Q9P272 454 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 VSIG4Q9Y279 399 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 NAV3Q8IVL0 2385 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 A0A0U1RQK1 487 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 FCGR3BO75015 233 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 HRASP01112 189 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 HLA-AP01891 365 aaKnown RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 AANATQ16613 207 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 KLF17Q5JT82 389 aaPredicted RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 CCBE1Q6UXH8 406 aaPredicted RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 C9orf139Q6ZV77 190 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 SLC25A42Q86VD7 318 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 ZNF695Q8IW36 515 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 ODF3L1Q8IXM7 274 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 SPAG16Q8N0X2 631 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 DRAXINQ8NBI3 349 aaPredicted RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 OR4C13Q8NGP0 309 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 OR5R1Q8NH85 324 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 ST6GALNAC6Q969X2 333 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 TSNAXQ99598 290 aaKnown RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 PHB2Q99623 299 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 SSX3Q99909 188 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 SMR3AQ99954 134 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 ZNF251Q9BRH9 671 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 MRPL20Q9BYC9 149 aaKnown RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 ALX4Q9H161 411 aaPredicted RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 MEGF9Q9H1U4 602 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 C5orf66Q9H5L9 145 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 ZNRD1Q9P1U0 126 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 TLN2Q9Y4G6 2542 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 CRYM-AS1A6NIL9 109 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 H0Y980 276 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 LY6LH3BQJ8 138 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 TIMM23O14925 209 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 SHOXO15266 292 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 CREBL2O60519 120 aaPredicted RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 MOSP00540 346 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 OR4E1P0C645 316 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 BTCP35070 178 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 RPS16P62249 146 aaKnown RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 IL17RELQ6ZVW7 336 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 LDLRAD3Q86YD5 345 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 SSMEM1Q8WWF3 244 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 RNF5Q99942 180 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 NABP2Q9BQ15 211 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 RTBDNQ9BSG5 229 aaPredicted RBP8.17□□□□□ -1.1
CD44-207ENST00000425428 RAB18Q9NP72 206 aa8.17□□□□□ -1.1
CD44-207ENST00000425428 RBFOX2O43251 390 aaKnown RBP eCLIP8.16□□□□□ -1.1
CD44-207ENST00000425428 HPRT1P00492 218 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 IFNA21P01568 189 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 CT45A6P0DMU7 189 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 CT45A5P0DMU8 189 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 CT45A7P0DMV0 189 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 TMEM11P17152 192 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 ANXA7P20073 488 aaKnown RBP8.16□□□□□ -1.1
CD44-207ENST00000425428 LGALS7P47929 136 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 DYNLT3P51808 116 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 KRTAP1-1Q07627 177 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 PLGLAQ15195 96 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 OR2B11Q5JQS5 317 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 UTF1Q5T230 341 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 C1orf229Q6ZS94 237 aaPredicted RBP8.16□□□□□ -1.1
CD44-207ENST00000425428 THNSL2Q86YJ6 484 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 LGI3Q8N145 548 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 DMBX1Q8NFW5 382 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 OR5AN1Q8NGI8 311 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 VSTM2AQ8TAG5 236 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 OSR1Q8TAX0 266 aaPredicted RBP8.16□□□□□ -1.1
CD44-207ENST00000425428 CASTOR1Q8WTX7 329 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 C22orf15Q8WYQ4 148 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 RRNAD1Q96FB5 475 aaKnown RBP8.16□□□□□ -1.1
CD44-207ENST00000425428 MARVELD1Q9BSK0 173 aa8.16□□□□□ -1.1
CD44-207ENST00000425428 CRYZL1O95825 349 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 FSHBP01225 129 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 IGKV1D-33P01593 117 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 IGKV1-33P01594 117 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 AKR1C2P52895 323 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 DEFB112Q30KQ8 113 aa8.15□□□□□ -1.1
CD44-207ENST00000425428 VMA21Q3ZAQ7 101 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms