RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 DIABLOQ9NR28 239 aa11.6□□□□□ -0.55
LIMS4-201ENST00000413601 SLC35D1Q9NTN3 355 aa11.6□□□□□ -0.55
LIMS4-201ENST00000413601 METTL1Q9UBP6 276 aaKnown RBP11.6□□□□□ -0.55
LIMS4-201ENST00000413601 FBXO7Q9Y3I1 522 aa11.6□□□□□ -0.55
LIMS4-201ENST00000413601 A0A0A6YYH2 397 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 TRAV41A0A0B4J266 112 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 A6NJ64 397 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 PRB2P02812 416 aaPredicted RBP11.59□□□□□ -0.55
LIMS4-201ENST00000413601 CTXN2P0C2S0 81 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 OR5H8P0DN80 308 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 PTHLHP12272 177 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 NFYAP23511 347 aaPredicted RBP11.59□□□□□ -0.55
LIMS4-201ENST00000413601 PPIFP30405 207 aaKnown RBP11.59□□□□□ -0.55
LIMS4-201ENST00000413601 THBS3P49746 956 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 NCS1P62166 190 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 CX3CL1P78423 397 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 NDPQ00604 133 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 KPRPQ5T749 579 aaPredicted RBP11.59□□□□□ -0.55
LIMS4-201ENST00000413601 CNIH2Q6PI25 160 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 GVQW1Q8N7I0 195 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 RNF152Q8N8N0 203 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 TSNAXQ99598 290 aaKnown RBP11.59□□□□□ -0.55
LIMS4-201ENST00000413601 AUNIPQ9H7T9 357 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 ANXA10Q9UJ72 324 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 OR2W1Q9Y3N9 320 aa11.59□□□□□ -0.55
LIMS4-201ENST00000413601 SMIM18P0DKX4 95 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 PSMB8P28062 276 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 SLC6A1P30531 599 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 VBP1P61758 197 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 UBE2NLQ5JXB2 153 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 ZNF660Q6AZW8 331 aaPredicted RBP11.58□□□□□ -0.56
LIMS4-201ENST00000413601 MRPL41Q8IXM3 137 aaKnown RBP11.58□□□□□ -0.56
LIMS4-201ENST00000413601 SAMD12Q8N8I0 201 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 LINC00482Q8N8I6 264 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 BVESQ8NE79 360 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 OR13F1Q8NGS4 319 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 ABHD5Q8WTS1 349 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 S100A16Q96FQ6 103 aaKnown RBP11.58□□□□□ -0.56
LIMS4-201ENST00000413601 DUX3Q96PT4 197 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 TPSG1Q9NRR2 321 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 A3GALT2U3KPV4 340 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 NOTCH3Q9UM47 2321 aa11.58□□□□□ -0.56
LIMS4-201ENST00000413601 IGKV1D-13A0A0B4J2D9 117 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 XRCC3O43542 346 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 SLC25A17O43808 307 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 SPDEFO95238 335 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 IGLV1-40P01703 118 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 IGLV2-23P01705 113 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 HLA-DQB1P01920 261 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 FCER2P06734 321 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 IGKV1-13P0DP09 117 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 EGR2P11161 476 aaPredicted RBP11.57□□□□□ -0.56
LIMS4-201ENST00000413601 DUTP33316 252 aaKnown RBP11.57□□□□□ -0.56
LIMS4-201ENST00000413601 MYCNOSP40205 109 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 CDX1P47902 265 aaPredicted RBP11.57□□□□□ -0.56
LIMS4-201ENST00000413601 LUMP51884 338 aaPredicted RBP11.57□□□□□ -0.56
LIMS4-201ENST00000413601 ECSCRQ19T08 205 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 DEFB136Q30KP8 78 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 TMEM65Q6PI78 240 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 BEST4Q8NFU0 473 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 SLC25A46Q96AG3 418 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 RAX2Q96IS3 184 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 KLK15Q9H2R5 256 aa11.57□□□□□ -0.56
LIMS4-201ENST00000413601 MEIS3P1A6NDR6 274 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 LINC00473A8K010 186 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 CCL24O00175 119 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 CA2P00918 260 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 ARPC4P59998 168 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 TAGLNQ01995 201 aaKnown RBP11.56□□□□□ -0.56
LIMS4-201ENST00000413601 CBX3Q13185 183 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 RTL8BQ17RB0 113 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 C19orf54Q5BKX5 351 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 HOGA1Q86XE5 327 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 ZNF645Q8N7E2 425 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 MINDY2Q8NBR6 621 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 DDB2Q92466 427 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 RCC1LQ96I51 464 aaKnown RBP11.56□□□□□ -0.56
LIMS4-201ENST00000413601 ADTRPQ96IZ2 230 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 HARBI1Q96MB7 349 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 P2RX4Q99571 388 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 FAM103A1Q9BTL3 118 aaKnown RBP11.56□□□□□ -0.56
LIMS4-201ENST00000413601 NAA50Q9GZZ1 169 aaKnown RBP11.56□□□□□ -0.56
LIMS4-201ENST00000413601 NUBP2Q9Y5Y2 271 aa11.56□□□□□ -0.56
LIMS4-201ENST00000413601 A0A1W2PN81 502 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 SHOXO15266 292 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 SOX15O60248 233 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 TUSC2O75896 110 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 RRASP10301 218 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 CHRNA7P36544 502 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 LGALS7P47929 136 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 CRIP2P52943 208 aaPredicted RBP11.55□□□□□ -0.56
LIMS4-201ENST00000413601 PJVKQ0ZLH3 352 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 KIAA0141Q14154 515 aaPredicted RBP11.55□□□□□ -0.56
LIMS4-201ENST00000413601 TMEM177Q53S58 311 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 FOXB2Q5VYV0 432 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 ZNF562Q6V9R5 426 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 PPP1R27Q86WC6 154 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 MYOZ3Q8TDC0 251 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 CASTOR1Q8WTX7 329 aa11.55□□□□□ -0.56
LIMS4-201ENST00000413601 C4orf3Q8WVX3 66 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms