RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 DUXBA0A1W2PPF3 345 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 THBDP07204 575 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 NPY1RP25929 384 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 RPL39P5Q59GN2 51 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 NCOA6Q14686 2063 aaPredicted RBP7.64□□□□□ -1.19
LIG4-202ENST00000405925 PCNX3Q9H6A9 2034 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 LAMA2P24043 3122 aaKnown RBP7.64□□□□□ -1.19
LIG4-202ENST00000405925 LEUTXA8MZ59 168 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 SOX15O60248 233 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 PLAUP00749 431 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 DYNLT3P51808 116 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 CXorf66Q5JRM2 361 aaPredicted RBP7.64□□□□□ -1.19
LIG4-202ENST00000405925 TEX261Q6UWH6 196 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 SPNS3Q6ZMD2 512 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 COA4Q9NYJ1 87 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 WASHC3Q9Y3C0 194 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 U3KQ87 197 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 NAV2Q8IVL1 2488 aa7.64□□□□□ -1.19
LIG4-202ENST00000405925 KBTBD11-OT1A0A1B0GTJ5 212 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 F6UZH7 168 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 KCNAB3O43448 404 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 PSPNO60542 156 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 S1PR2O95136 353 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 LGALS7P47929 136 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 UCP3P55916 312 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 UBE2KP61086 200 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 ECSCRQ19T08 205 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 RSPO1Q2MKA7 263 aaPredicted RBP7.63□□□□□ -1.19
LIG4-202ENST00000405925 NCMAPQ5T1S8 102 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 FAM166AQ6J272 317 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 MYPOPQ86VE0 399 aaPredicted RBP7.63□□□□□ -1.19
LIG4-202ENST00000405925 CHAC2Q8WUX2 184 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 POMT1Q9Y6A1 747 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 IGKV1D-8A0A087WSZ0 117 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 TRBV23-1A0A0A0MS06 115 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 RPL27AP46776 148 aaKnown RBP7.63□□□□□ -1.19
LIG4-202ENST00000405925 P2RY1P47900 373 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 FFAR4Q5NUL3 377 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 VKORC1L1Q8N0U8 176 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 TCTEX1D1Q8N7M0 179 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 FAM169BQ8N8A8 192 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 SOSTQ9BQB4 213 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 TMEM147Q9BVK8 224 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 DOK5Q9P104 306 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 MMP24Q9Y5R2 645 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 MARCH11A6NNE9 402 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 CEACAM18A8MTB9 384 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 E7EQL1 145 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 TSPAN9O75954 239 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 SLC25A4P12235 298 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 EWSR1Q01844 656 aaKnown RBP eCLIP7.63□□□□□ -1.193e-6■■■■■ 31.4
LIG4-202ENST00000405925 GPR146Q96CH1 333 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 DAZAP1Q96EP5 407 aaKnown RBP7.63□□□□□ -1.19
LIG4-202ENST00000405925 OR10C1Q96KK4 312 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 TP53RKQ96S44 253 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 NIPSNAP3BQ9BS92 247 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 TLNRD1Q9H1K6 362 aa7.63□□□□□ -1.19
LIG4-202ENST00000405925 UMAD1C9J7I0 102 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 SMAD7O15105 426 aaKnown RBP7.62□□□□□ -1.19
LIG4-202ENST00000405925 ZNF250P15622 560 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 TMEM11P17152 192 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 UQCRFS1P47985 274 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 RAB5CP51148 216 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 TMEM30BQ3MIR4 351 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 ETFRF1Q6IPR1 90 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 TMEM186Q96B77 213 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 MED9Q9NWA0 146 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 DKK4Q9UBT3 224 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 OR51B2Q9Y5P1 312 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 LINC00312Q9Y6C7 94 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 LDLRAD4O15165 306 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 UBE2G2P60604 165 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 MEF2CQ06413 473 aaPredicted RBP7.62□□□□□ -1.19
LIG4-202ENST00000405925 PXDC1Q5TGL8 231 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 SVBPQ8N300 66 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 NUP37Q8NFH4 326 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 C20orf24Q9BUV8 137 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 TMEM140Q9NV12 185 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 METTL1Q9UBP6 276 aaKnown RBP7.62□□□□□ -1.19
LIG4-202ENST00000405925 IGHV3-21A0A0B4J1V1 117 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 SNAPINO95295 136 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 EGR1P18146 543 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 H2BFSP57053 126 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 RPL8P62917 257 aaKnown RBP7.62□□□□□ -1.19
LIG4-202ENST00000405925 ZNF146Q15072 292 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 RTN4RL2Q86UN3 420 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 RXFP4Q8TDU9 374 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 OR5AC2Q9NZP5 309 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 ZNF581Q9P0T4 197 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 KRBOX1C9JBD0 128 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 SIGLEC5O15389 551 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 FAM106CPP0CH98 169 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 SULT1A1P50225 295 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 LGALSLQ3ZCW2 172 aaPredicted RBP7.62□□□□□ -1.19
LIG4-202ENST00000405925 H1FOOQ8IZA3 346 aaPredicted RBP7.62□□□□□ -1.19
LIG4-202ENST00000405925 SSMEM1Q8WWF3 244 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 SLC25A22Q9H936 323 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 METRNQ9UJH8 293 aa7.62□□□□□ -1.19
LIG4-202ENST00000405925 IGKV1D-13A0A0B4J2D9 117 aa7.61□□□□□ -1.19
LIG4-202ENST00000405925 TGFAP01135 160 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms