RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 ASCL5Q7RTU5 278 aa11.66□□□□□ -0.54
SNCA-204ENST00000394989 LRFN3Q9BTN0 628 aa11.66□□□□□ -0.54
SNCA-204ENST00000394989 C19orf12Q9NSK7 152 aa11.66□□□□□ -0.54
SNCA-204ENST00000394989 SRRM5B3KS81 715 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 K7N7A8 449 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 BAXQ07812 192 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 FAM27E3Q08E93 113 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 TGIF2LXQ8IUE1 241 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 GCSAMQ8N6F7 178 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 FAM57AQ8TBR7 257 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 PRDM13Q9H4Q3 707 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 CUL9Q8IWT3 2517 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 DIDO1Q9BTC0 2240 aaKnown RBP11.65□□□□□ -0.54
SNCA-204ENST00000394989 HOXA5P20719 270 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 PRDX2P32119 198 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 CLEC12BQ2HXU8 276 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 RNASE11Q8TAA1 199 aaKnown RBP11.65□□□□□ -0.54
SNCA-204ENST00000394989 ABHD17AQ96GS6 310 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 SFXN3Q9BWM7 321 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 APC2O95996 2303 aa11.65□□□□□ -0.54
SNCA-204ENST00000394989 USF3Q68DE3 2245 aa11.65□□□□□ -0.55
SNCA-204ENST00000394989 CRYAAP02489 173 aa11.65□□□□□ -0.55
SNCA-204ENST00000394989 CDX1P47902 265 aaPredicted RBP11.65□□□□□ -0.55
SNCA-204ENST00000394989 CCL20P78556 96 aa11.65□□□□□ -0.55
SNCA-204ENST00000394989 VHLLQ6RSH7 139 aa11.65□□□□□ -0.55
SNCA-204ENST00000394989 OR2V2Q96R30 315 aa11.65□□□□□ -0.55
SNCA-204ENST00000394989 MAP1BP46821 2468 aaKnown RBP11.64□□□□□ -0.55
SNCA-204ENST00000394989 IGHV3-43A0A0B4J1X8 118 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 ZNF705GA8MUZ8 300 aaPredicted RBP11.64□□□□□ -0.55
SNCA-204ENST00000394989 C15orf65H3BRN8 121 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 IGHV3-43DP0DP04 118 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 GLRXP35754 106 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 RUNX1Q01196 453 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 PAX5Q02548 391 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 FGFRL1Q8N441 504 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 ZNF808Q8N4W9 903 aaPredicted RBP11.64□□□□□ -0.55
SNCA-204ENST00000394989 RFESDQ8TAC1 157 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 A8MXE2 369 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 PPP1R2P9O14990 202 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 BMP5P22003 454 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 LINC00205P59089 165 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 TMEM267Q0VDI3 215 aaPredicted RBP11.64□□□□□ -0.55
SNCA-204ENST00000394989 KRTCAP3Q53RY4 240 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 KHDC3LQ587J8 217 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 OR2G3Q8NGZ4 309 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 WSB1Q9Y6I7 421 aa11.64□□□□□ -0.55
SNCA-204ENST00000394989 RELNP78509 3460 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 IGLV3-9A0A075B6K5 115 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 IGHV3OR15-7A0A075B7D8 119 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 PIGBOS1A0A0B4J2F0 54 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 DDTP30046 118 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 CCKARP32238 428 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 KLF3P57682 345 aaPredicted RBP11.63□□□□□ -0.55
SNCA-204ENST00000394989 C3orf36Q3SXR2 165 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 Q8WTZ3 238 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 MUCL1Q96DR8 90 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 AGMATQ9BSE5 352 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 STRAPQ9Y3F4 350 aaKnown RBP11.63□□□□□ -0.55
SNCA-204ENST00000394989 ACACAQ13085 2346 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 SYNGR2O43760 224 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 CFHR2P36980 270 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 TDGF1P3P51864 188 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 UBE2KP61086 200 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 EDDM3AQ14507 147 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 BTNL3Q6UXE8 466 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 RAB40CQ96S21 281 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 SSUH2Q9Y2M2 353 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 DEFB108AA8MXU0 73 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 P0C879 139 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 IAPPP10997 89 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 ERVFRD-1P60508 538 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 MOGAT3Q86VF5 341 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 ATP5SQ99766 215 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 SLC35B3Q9H1N7 401 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 TP53TG5Q9Y2B4 290 aa11.63□□□□□ -0.55
SNCA-204ENST00000394989 PTPRZ1P23471 2315 aaPredicted RBP11.63□□□□□ -0.55
SNCA-204ENST00000394989 SPRY3O43610 288 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 LHBP01229 141 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 MZT1Q08AG7 82 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 ARL16Q0P5N6 197 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 AKR1C8PQ5T2L2 129 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 Q8NA96 180 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 ZBTB34Q8NCN2 500 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 PLCE1Q9P212 2302 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 RNF212BA8MTL3 300 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 C17orf98A8MV24 154 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 MKRN2OSH3BPM6 223 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST1H2BKO60814 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 SCAF4O95104 1147 aaKnown RBP11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST1H2BJP06899 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST1H2BOP23527 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST1H2BBP33778 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST1H2BDP58876 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST1H2BCP62807 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST2H2BEQ16778 126 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.62□□□□□ -0.55
SNCA-204ENST00000394989 HEPN1Q6WQI6 88 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 HAPLN4Q86UW8 402 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 DOLPP1Q86YN1 238 aa11.62□□□□□ -0.55
SNCA-204ENST00000394989 ZNRF1Q8ND25 227 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms