RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CCL20P78556 96 aa12.47□□□□□ -0.41
GPC3-202ENST00000394299 ZNF561Q8N587 486 aa12.47□□□□□ -0.41
GPC3-202ENST00000394299 ZDHHC16Q969W1 377 aa12.47□□□□□ -0.41
GPC3-202ENST00000394299 VKORC1Q9BQB6 163 aa12.47□□□□□ -0.41
GPC3-202ENST00000394299 FBXO7Q9Y3I1 522 aa12.47□□□□□ -0.41
GPC3-202ENST00000394299 WSB1Q9Y6I7 421 aa12.47□□□□□ -0.41
GPC3-202ENST00000394299 YLPM1P49750 1951 aaKnown RBP12.46□□□□□ -0.41
GPC3-202ENST00000394299 DCHS2Q6V1P9 2916 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 FAM90A27PA6NNH2 459 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 E7EQL1 145 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 M0R1X1 148 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 TOR1AO14656 332 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 GPR37O15354 613 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 FCN3O75636 299 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 CD55P08174 381 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 ATF4P18848 351 aaPredicted RBP12.46□□□□□ -0.41
GPC3-202ENST00000394299 TLE1Q04724 770 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 TNFRSF9Q07011 255 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 BAXQ07812 192 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 TRAT1Q6PIZ9 186 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 ZNF788Q6ZQV5 615 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 STX12Q86Y82 276 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 DMRTC2Q8IXT2 367 aaPredicted RBP12.46□□□□□ -0.41
GPC3-202ENST00000394299 CCL17Q92583 94 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 IFI27L2Q9H2X8 130 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 JPT1Q9UK76 154 aa12.46□□□□□ -0.41
GPC3-202ENST00000394299 SHISA9B4DS77 424 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 F2RL2O00254 374 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 YPEL1O60688 119 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 CT45A1Q5HYN5 189 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 THNSL2Q86YJ6 484 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 CT45A3Q8NHU0 189 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 YPEL2Q96QA6 119 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 ATP5SQ99766 215 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 LRRC30A6NM36 301 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 DNASE2O00115 360 aaPredicted RBP12.45□□□□□ -0.42
GPC3-202ENST00000394299 RBMXL2O75526 392 aaKnown RBP12.45□□□□□ -0.42
GPC3-202ENST00000394299 CD5P06127 495 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 IRF2P14316 349 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 SNCAP37840 140 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 Q8TCH9 128 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 RSG1Q9BU20 258 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 SCRT1Q9BWW7 348 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 NKX6-2Q9C056 277 aaPredicted RBP12.45□□□□□ -0.42
GPC3-202ENST00000394299 ZNF665Q9H7R5 613 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 SEBOXQ9HB31 216 aaPredicted RBP12.45□□□□□ -0.42
GPC3-202ENST00000394299 OR6C3Q9NZP0 311 aa12.45□□□□□ -0.42
GPC3-202ENST00000394299 KBTBD11-OT1A0A1B0GTJ5 212 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 NUDT19A8MXV4 375 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 ZG16O60844 167 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 SFTA3P0C7M3 94 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 NDUFB7P17568 137 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 GNG10P50151 68 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 OR8G2PQ6IF36 304 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 FAM122CQ6P4D5 195 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 ZNF66Q6ZN08 573 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 H2BFWTQ7Z2G1 175 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 EDARADDQ8WWZ3 215 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 HSD17B10Q99714 261 aaKnown RBP12.44□□□□□ -0.42
GPC3-202ENST00000394299 MARCH11A6NNE9 402 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 FAM157AC9JC47 383 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 EIF3GO75821 320 aaKnown RBP eCLIP12.44□□□□□ -0.42
GPC3-202ENST00000394299 OR9G9P0C7N8 305 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 OR2B8PP59922 312 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 TMEM88Q6PEY1 159 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 KDF1Q8NAX2 398 aaPredicted RBP12.44□□□□□ -0.42
GPC3-202ENST00000394299 SAP30LQ9HAJ7 183 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 ABCA4P78363 2273 aa12.44□□□□□ -0.42
GPC3-202ENST00000394299 NPBWR1P48145 328 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 SLC25A24Q6NUK1 477 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 LYPD2Q6UXB3 125 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 R3HDM4Q96D70 268 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 VSIRQ9H7M9 311 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.43□□□□□ -0.42
GPC3-202ENST00000394299 HSPB7Q9UBY9 170 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 DSCAML1Q8TD84 2053 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 TRGV10A0A0A0MS01 117 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 TRAV3A0A0B4J244 114 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 CCL21O00585 134 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 C1QTNF9P0C862 333 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 TNFRSF1AP19438 455 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 PPT1P50897 306 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 CTAG1AP78358 180 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 ZNF273Q14593 569 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 GUK1Q16774 197 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 C10orf91Q5T1B1 145 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 NCMAPQ5T1S8 102 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 PRAMEF5Q5TYX0 476 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 TEX36Q5VZQ5 186 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 ZNF525Q8N782 197 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 RNASE6Q93091 150 aaKnown RBP12.43□□□□□ -0.42
GPC3-202ENST00000394299 OR4C12Q96R67 309 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 RARRES2Q99969 163 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 QTRT1Q9BXR0 403 aaKnown RBP12.43□□□□□ -0.42
GPC3-202ENST00000394299 EIF5A2Q9GZV4 153 aaKnown RBP12.43□□□□□ -0.42
GPC3-202ENST00000394299 GFOD1Q9NXC2 390 aa12.43□□□□□ -0.42
GPC3-202ENST00000394299 TPRP12270 2363 aaKnown RBP12.43□□□□□ -0.42
GPC3-202ENST00000394299 PIGBOS1A0A0B4J2F0 54 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.42□□□□□ -0.42
GPC3-202ENST00000394299 DVL1P1P54792 670 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms