RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 LOXL3P58215 753 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 TCF24Q7RTU0 167 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 TMEM183AQ8IXX5 376 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 RNF128Q8TEB7 428 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 GALNT14Q96FL9 552 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 ACY3Q96HD9 319 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 ATF6BQ99941 703 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 DEPPQ9NTK1 212 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 PCTPQ9UKL6 214 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 NSG2Q9Y328 171 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 CROCCQ5TZA2 2017 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 C4orf48Q5BLP8 95 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 TCTEX1D4Q5JR98 221 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 FER1L6-AS1Q8NA97 138 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 C10orf35Q96D05 121 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 RARRES2Q99969 163 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 MESP1Q9BRJ9 268 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 SLC7A10Q9NS82 523 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 SH2B3Q9UQQ2 575 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 ST3GAL6Q9Y274 331 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.91□□□□□ -1.3
LIMS1-203ENST00000393310 IGHV3-15A0A0B4J1V0 119 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 F5H5K5 113 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 ORM1P02763 201 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 RFPL3SP0C7P2 107 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 VSIG10L2P0DP72 767 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 HTR1DP28221 377 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 ZNF343Q6P1L6 599 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 OR5AU1Q8NGC0 362 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 MRPL13Q9BYD1 178 aaKnown RBP6.91□□□□□ -1.3
LIMS1-203ENST00000393310 GLIPR2Q9H4G4 154 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 WSB1Q9Y6I7 421 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 USF3Q68DE3 2245 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 C5orf49A4QMS7 147 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 SHISA8B8ZZ34 492 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 J3QR06 171 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 BCL2L11O43521 198 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 CRISP1P54107 249 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 CTF1Q16619 201 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 RPL7L1Q6DKI1 246 aaKnown RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 LINC01551Q86U37 167 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 MKXQ8IYA7 352 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 OR2T12Q8NG77 320 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 SCGB3A2Q96PL1 93 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 PLA2G12AQ9BZM1 189 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 SELENOIQ9C0D9 397 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 SLC25A31Q9H0C2 315 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 CARHSP1Q9Y2V2 147 aaKnown RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 ANKHD1Q8IWZ3 2542 aaKnown RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 A0A1W2PRX2 142 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 TCRBV4S1A1TA0A5B7 111 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 MUC1P15941 1255 aaPredicted RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 RPL12P30050 165 aaKnown RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 GDNFP39905 211 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 VDAC2P45880 294 aaPredicted RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 PNKDQ8N490 385 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 C11orf44Q8N8P7 122 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 TMED6Q8WW62 240 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 BORCS8Q96FH0 119 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 KCNK15Q9H427 330 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 ZNF331Q9NQX6 463 aaPredicted RBP6.9□□□□□ -1.3
LIMS1-203ENST00000393310 PKIGQ9Y2B9 76 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 SCN8AQ9UQD0 1980 aa6.9□□□□□ -1.3
LIMS1-203ENST00000393310 B4DEV8 164 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 LANCL1O43813 399 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 MAS1P04201 325 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 IGKV3-11P04433 115 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 SMIM17P0DL12 118 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 SMIM10L1P0DMW3 83 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 B4GALT1P15291 398 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 GZMHP20718 246 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 DTX2Q86UW9 622 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 ZNF664Q8N3J9 261 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 SMIM10Q96HG1 83 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 FAM103A1Q9BTL3 118 aaKnown RBP6.9□□□□□ -1.31
LIMS1-203ENST00000393310 TNRC18O15417 2968 aaPredicted RBP6.9□□□□□ -1.31
LIMS1-203ENST00000393310 A0A0G2JK05 382 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 H3BQ15 152 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 FCMRO60667 390 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 ZNF19P17023 458 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 SPHARQ15513 63 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 EFNB3Q15768 340 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 ZNF260Q3ZCT1 412 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 PRR31Q5SQ13 230 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 FAM71E1Q6IPT2 247 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 ZDHHC24Q6UX98 284 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 LIAT1Q6ZQX7 453 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 OR4M1Q8NGD0 313 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 OR52I1Q8NGK6 324 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 HAVCR2Q8TDQ0 301 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 GPR78Q96P69 363 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 TSPAN32Q96QS1 320 aa6.9□□□□□ -1.31
LIMS1-203ENST00000393310 LRRC3CA6NJW4 275 aa6.89□□□□□ -1.31
LIMS1-203ENST00000393310 ZNF354AO60765 605 aaPredicted RBP6.89□□□□□ -1.31
LIMS1-203ENST00000393310 CCL8P80075 99 aa6.89□□□□□ -1.31
LIMS1-203ENST00000393310 ZNF678Q5SXM1 525 aa6.89□□□□□ -1.31
LIMS1-203ENST00000393310 DUSP18Q8NEJ0 188 aa6.89□□□□□ -1.31
LIMS1-203ENST00000393310 ACTR3CQ9C0K3 210 aaPredicted RBP6.89□□□□□ -1.31
LIMS1-203ENST00000393310 PRRC2AP48634 2157 aaKnown RBP6.89□□□□□ -1.31
LIMS1-203ENST00000393310 GAGE12HA6NDE8 117 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms