RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 NRN1Q9NPD7 142 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 TBL2Q9Y4P3 447 aaKnown RBP12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 TRAV30A0A087WSZ9 112 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 CD300LBA8K4G0 201 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 CRYAAP02489 173 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 KITLGP21583 273 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 TNFSF4P23510 183 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 OR1K1Q8NGR3 316 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 OXGR1Q96P68 337 aa12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 AKIRIN1Q9H9L7 192 aaPredicted RBP12.41□□□□□ -0.42
VPS9D1-201ENST00000389386 IGKV1-6A0A0C4DH72 117 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 LOC102725191A0A1B0GVB3 256 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 A0A1W2PNR3 127 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 PDE6DO43924 150 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 IGKV1-39P01597 117 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 IGKV1D-39P04432 117 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 SUMO3P55854 103 aaPredicted RBP12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 FBXW4P57775 412 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 PMP22Q01453 160 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 LHFPL4Q7Z7J7 247 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 KLHDC1Q8N7A1 406 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 OR2M3Q8NG83 312 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 OR51H1Q8NH63 302 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 LRFN3Q9BTN0 628 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 SLC35D1Q9NTN3 355 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 RNF24Q9Y225 148 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 EP300Q09472 2414 aaPredicted RBP12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 FAM166BA8MTA8 275 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 SMPD2O60906 423 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 ZNF253O75346 499 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 SERPINA7P05543 415 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 GUCA1AP43080 201 aaPredicted RBP12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 SRSF7Q16629 238 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 ZDHHC23Q8IYP9 409 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 CORO2AQ92828 525 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 LSM10Q969L4 123 aaKnown RBP12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 STRADBQ9C0K7 418 aa12.4□□□□□ -0.42
VPS9D1-201ENST00000389386 MDFIC2A0A1B0GVS7 189 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 OCIAD2Q56VL3 154 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 ZIC4Q8N9L1 334 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 GNB4Q9HAV0 340 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 PILRBQ9UKJ0 227 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 COL5A1P20908 1838 aaPredicted RBP12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 A0A1W2PQM1 296 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 ZNF90Q03938 601 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TCTEX1D1Q8N7M0 179 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TNFRSF14Q92956 283 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 SPTSSAQ969W0 71 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 NABP1Q96AH0 204 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 UHRF2Q96PU4 802 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 CST9LQ9H4G1 147 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TRBV20OR9-2A0A075B6H5 130 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TRAV9-1A0A075B6T8 112 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 IGHV2-26A0A0B4J1V2 119 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 PIGBOS1A0A0B4J2F0 54 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 FCN1O00602 326 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 IGKV1-5P01602 117 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TIMP3P35625 211 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 CCL7P80098 99 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 RPL19P84098 196 aaKnown RBP12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 HLA-BQ31612 363 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 PHYHD1Q5SRE7 291 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 LDLRAD2Q5SZI1 272 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TMEM42Q69YG0 159 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 TMEM14EPQ6UXP3 125 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 OR10G8Q8NGN5 311 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 CHRNA10Q9GZZ6 450 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 PLEK2Q9NYT0 353 aa12.39□□□□□ -0.43
VPS9D1-201ENST00000389386 IGHV1-69-2A0A0G2JMI3 117 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 TLX3O43711 291 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 WDR1O75083 606 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 FRMD6-AS1P0C7T7 363 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 COX5AP20674 150 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 ATP5G3P48201 142 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 PRRX1P54821 245 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 RPS20P60866 119 aaKnown RBP12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 KRTCAP3Q53RY4 240 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 CFAP161Q6P656 301 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 BATF2Q8N1L9 274 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 CDC42EP3Q9UKI2 254 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 IGLC7A0M8Q6 106 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 DPRXA6NFQ7 191 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 AMTP48728 403 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 RHOGP84095 191 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 GMPPAQ96IJ6 420 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 WNT10AQ9GZT5 417 aa12.38□□□□□ -0.43
VPS9D1-201ENST00000389386 EML6Q6ZMW3 1958 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 SAA2-SAA4A0A096LPE2 208 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 J3QW42 95 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 NDUFS8O00217 210 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 C3orf79P0CE67 100 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 S100GP29377 79 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 TRIP6Q15654 476 aaKnown RBP12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 VAMP3Q15836 100 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 HLA-DRB5Q30154 266 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 SLC25A53Q5H9E4 307 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 OR5B3Q8NH48 314 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 CHODLQ9H9P2 273 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 IL36BQ9NZH7 164 aa12.37□□□□□ -0.43
VPS9D1-201ENST00000389386 A0A1W2PS18 150 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms