RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC35E4Q6ICL7 350 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 OR1S2Q8NGQ3 325 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 UBALD1Q8TB05 177 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 ABHD14BQ96IU4 210 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 AKR1E2Q96JD6 320 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 SMIM3Q9BZL3 60 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 LPAR3Q9UBY5 353 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 TANC2Q9HCD6 1990 aa8.4□□□□□ -1.07
VPS53-202ENST00000389040 DYSFO75923 2080 aa8.4□□□□□ -1.07
VPS53-202ENST00000389040 TRBV23-1A0A0A0MS06 115 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 SERPINE2P07093 398 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 PPIAL4GP0DN37 164 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 CEACAM6P40199 344 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 AESQ08117 197 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 WDR25Q64LD2 544 aaPredicted RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 UBAC2Q8NBM4 344 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 OR51H1Q8NH63 302 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 MARC2Q969Z3 335 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 TMEM186Q96B77 213 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 LOC105371242A0A075B767 164 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 IGHV3OR15-7A0A075B7D8 119 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 RAB19A4D1S5 217 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 ZNF705EA8MWA4 302 aaPredicted RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 C12orf77C9JDV5 145 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 K7N7A8 449 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 DVL1O14640 695 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 TGFAP01135 160 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 PVALBP20472 110 aaPredicted RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 IL2RGP31785 369 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 GABRA2P47869 451 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 OR3A1P47881 315 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 PAX5Q02548 391 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 COL10A1Q03692 680 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 UQCC3Q6UW78 93 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 CLEC9AQ6UXN8 241 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 OR1L1Q8NH94 360 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 GALMQ96C23 342 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 BSCL2Q96G97 398 aaPredicted RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 COQ2Q96H96 371 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 SNX22Q96L94 193 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 GAFA1Q96PS6 74 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 CCL13Q99616 98 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 PARP12Q9H0J9 701 aaKnown RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 C11orf1Q9H5F2 150 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 SLC25A10Q9UBX3 287 aaPredicted RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 KCNS2Q9ULS6 477 aa8.39□□□□□ -1.07
VPS53-202ENST00000389040 RBM7Q9Y580 266 aaKnown RBP8.39□□□□□ -1.07
VPS53-202ENST00000389040 A0A1W2PPH5 198 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 NUDT19A8MXV4 375 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 FAM157AC9JC47 383 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 ENSAO43768 121 aaKnown RBP8.38□□□□□ -1.07
VPS53-202ENST00000389040 SSSCA1O60232 199 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 TFF1P04155 84 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 OR8U9P0C7N5 309 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 POLR2GP62487 172 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS53-202ENST00000389040 CXorf66Q5JRM2 361 aaPredicted RBP8.38□□□□□ -1.07
VPS53-202ENST00000389040 KRBOX4Q5JUW0 171 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 LYPD2Q6UXB3 125 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 BTNL3Q6UXE8 466 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 MAPK1IP1LQ8NDC0 245 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 OR8U1Q8NH10 309 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 C8orf46Q8TAG6 207 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 ARL11Q969Q4 196 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 SAT2Q96F10 170 aaPredicted RBP8.38□□□□□ -1.07
VPS53-202ENST00000389040 ARV1Q9H2C2 271 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 NCOR1P1Q9H4R4 102 aa8.38□□□□□ -1.07
VPS53-202ENST00000389040 LIN7CQ9NUP9 197 aaKnown RBP8.38□□□□□ -1.07
VPS53-202ENST00000389040 CELSR1Q9NYQ6 3014 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 BORCS7-ASMTA0A0B4J1R7 106 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 KIAA1324LA8MWY0 1029 aaPredicted RBP8.37□□□□□ -1.07
VPS53-202ENST00000389040 ZNF737O75373 536 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 HBZP02008 142 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 M6PRP20645 277 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 SULT1A2P50226 295 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 EWSR1Q01844 656 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS53-202ENST00000389040 ID3Q02535 119 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 NHLH2Q02577 135 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 C1orf122Q6ZSJ8 110 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 STPG2Q8N412 459 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 OR2C3Q8N628 320 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 CD177Q8N6Q3 437 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 BPIFCQ8NFQ6 507 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 SMIM8Q96KF7 97 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MAGT1Q9H0U3 335 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 WFDC1Q9HC57 220 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MMP26Q9NRE1 261 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 LYRM2Q9NU23 88 aaPredicted RBP8.37□□□□□ -1.07
VPS53-202ENST00000389040 HIF1ANQ9NWT6 349 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 CTSZQ9UBR2 303 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 TMA7Q9Y2S6 64 aaKnown RBP8.37□□□□□ -1.07
VPS53-202ENST00000389040 CHD3Q12873 2000 aaKnown RBP8.37□□□□□ -1.07
VPS53-202ENST00000389040 A0A1B0GU03 582 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 RNF212BA8MTL3 300 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MGST3O14880 152 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 FBXO24O75426 580 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MED6O75586 246 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 LY6G6DO95868 133 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 SLC25A6P12236 298 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 MMP9P14780 707 aa8.37□□□□□ -1.07
VPS53-202ENST00000389040 CAV2P51636 162 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms