RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 MAP1LC3AQ9H492 121 aa12.36□□□□□ -0.43
TRAF1-201ENST00000373887 SBF2Q86WG5 1849 aa12.36□□□□□ -0.43
TRAF1-201ENST00000373887 PSMB11A5LHX3 300 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 TMEM210A6NLX4 147 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 MUC1P15941 1255 aaPredicted RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 FCGR2BP31994 310 aaPredicted RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 ATP5J2P56134 94 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 PQLC2Q6ZP29 291 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 NFAM1Q8NET5 270 aaPredicted RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 MRPL18Q9H0U6 180 aaKnown RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 PARLQ9H300 379 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 TGIF2-C20orf24A0A0A6YYL0 155 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 PGPA6NDG6 321 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 IGKV3-20P01619 116 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 FCGR3AP08637 254 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 LINC00869P0C866 280 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 ZNF56Q15929 161 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 CYB5R3P00387 301 aaPredicted RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 UCP2P55851 309 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 CIRBPQ14011 172 aaKnown RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 ZNF826PQ6ZT77 177 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 SCNM1Q9BWG6 230 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 CCDC144NLQ6NUI1 221 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 TBL2Q9Y4P3 447 aaKnown RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 CCL27Q9Y4X3 112 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 PRR33A8MZF0 331 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 C4orf51C9J302 202 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 LEPROTL1O95214 131 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 PSG4Q00888 419 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 EIF4EBP2Q13542 120 aaPredicted RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 LY6EQ16553 131 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 ZNF506Q5JVG8 444 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 ZNF418Q8TF45 676 aaPredicted RBP12.35□□□□□ -0.43
TRAF1-201ENST00000373887 RNF133Q8WVZ7 376 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 OR5AC2Q9NZP5 309 aa12.35□□□□□ -0.43
TRAF1-201ENST00000373887 AMY1AP04745 511 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 DUX5Q96PT3 197 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 C17orf51A8MQB3 221 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 RPL27AP46776 148 aaKnown RBP12.34□□□□□ -0.43
TRAF1-201ENST00000373887 NPBWR2P48146 333 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 OR10S1Q8NGN2 331 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 TMEM56-RWDD3S4R434 201 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 ZIC3O60481 467 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 REG1AP05451 166 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 C10orf126Q8N4M7 172 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 ITLN1Q8WWA0 313 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 C10orf35Q96D05 121 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 GPR82Q96P67 336 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 LINC00470Q9BZP3 86 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 NPVFQ9HCQ7 196 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 CXorf65A6NEN9 183 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 HPRT1P00492 218 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 VSIG10L2P0DP72 767 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 TMEM177Q53S58 311 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 CDS2O95674 445 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 CTSSP25774 331 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 RBKSQ9H477 322 aa12.34□□□□□ -0.43
TRAF1-201ENST00000373887 MBNL2Q5VZF2 373 aaKnown RBP12.33□□□□□ -0.43
TRAF1-201ENST00000373887 WNT2BQ93097 391 aa12.33□□□□□ -0.43
TRAF1-201ENST00000373887 KLHDC2Q9Y2U9 406 aa12.33□□□□□ -0.43
TRAF1-201ENST00000373887 DNAL4O96015 105 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 PRSS53Q2L4Q9 553 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 LINC00596Q86U02 117 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 ZBTB34Q8NCN2 500 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 SEC11BP0C7V7 166 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 UNQ5815/PRO19632Q6UWF5 114 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 PGPEP1Q9NXJ5 209 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 PCM1Q15154 2024 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 A0A0B4J293 547 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 AHRRA9YTQ3 701 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 TGFAP01135 160 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 HMGA2P52926 109 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 RBM11P57052 281 aaKnown RBP12.33□□□□□ -0.44
TRAF1-201ENST00000373887 GEMIN7Q9H840 131 aaKnown RBP12.33□□□□□ -0.44
TRAF1-201ENST00000373887 WNK3Q9BYP7 1800 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 KIAA1644Q3SXP7 199 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 MIC13Q5XKP0 118 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 H1FOOQ8IZA3 346 aaPredicted RBP12.33□□□□□ -0.44
TRAF1-201ENST00000373887 OR1P1Q8NH06 330 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 SRXN1Q9BYN0 137 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 UNC13CQ8NB66 2214 aa12.33□□□□□ -0.44
TRAF1-201ENST00000373887 SRSF12Q8WXF0 261 aaKnown RBP12.32□□□□□ -0.44
TRAF1-201ENST00000373887 CHRNA10Q9GZZ6 450 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 SLC25A17O43808 307 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 RAX2Q96IS3 184 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 PIMREGQ9BSJ6 248 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 KNTC1P50748 2209 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 FAM106CPP0CH98 169 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 RFLNBQ8N5W9 214 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 CHST5Q9GZS9 411 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 TNFSF18Q9UNG2 199 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 A0A1W2PR77 199 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 ABHD17AQ96GS6 310 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 hCG_38984A0A1B0GV85 526 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 WNT9BO14905 357 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 C1QL1O75973 258 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 OR4D5Q8NGN0 318 aa12.32□□□□□ -0.44
TRAF1-201ENST00000373887 MRPS16Q9Y3D3 137 aaKnown RBP12.32□□□□□ -0.44
TRAF1-201ENST00000373887 A0A1W2PS18 150 aa12.31□□□□□ -0.44
TRAF1-201ENST00000373887 SUMO2P61956 95 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms