RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 FAM53AQ6NSI3 398 aaPredicted RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 FAM58AQ8N1B3 248 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 HLA-CQ95604 372 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 VPS25Q9BRG1 176 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 LOC102723996A0A087X1L8 192 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 C20orf202A1L168 122 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 DEGS1O15121 323 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 DCAF10Q5QP82 559 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 RIPPLY2Q5TAB7 128 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 GBGT1Q8N5D6 347 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 TRAPPC2LQ9UL33 140 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 CFIP05156 583 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 IL3RAP26951 378 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 CHRNB4P30926 498 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 SRD5A2P31213 254 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 G6PCP35575 357 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 ACOT6Q3I5F7 207 aaPredicted RBP11.56□□□□□ -0.56
USP49-201ENST00000373006 SAXO1Q8IYX7 474 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 DERL1Q9BUN8 251 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 MRPS17Q9Y2R5 130 aaKnown RBP11.56□□□□□ -0.56
USP49-201ENST00000373006 TRAPPC1Q9Y5R8 145 aa11.56□□□□□ -0.56
USP49-201ENST00000373006 USF3Q68DE3 2245 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 LY6G6EA0A0G2JKS1 128 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 CTXND1A0A1B0GTU2 59 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 GGCTO75223 188 aaKnown RBP11.55□□□□□ -0.56
USP49-201ENST00000373006 GCH1P30793 250 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 RAB7AP51149 207 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 ZXDAP98168 799 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 ZNF816Q0VGE8 651 aaPredicted RBP11.55□□□□□ -0.56
USP49-201ENST00000373006 ACSF3Q4G176 576 aaPredicted RBP11.55□□□□□ -0.56
USP49-201ENST00000373006 TCF23Q7RTU1 214 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 OR1L1Q8NH94 360 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 ANAPC16Q96DE5 110 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 OR2J1Q9GZK6 312 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 U3KQA8 63 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 NCKAP5O14513 1909 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 KIAA1549Q9HCM3 1950 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 C11orf94C9JXX5 98 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 MPLP40238 635 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 SPATA46Q5T0L3 261 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 TMPRSS7Q7RTY8 843 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 CISD2Q8N5K1 135 aaKnown RBP11.55□□□□□ -0.56
USP49-201ENST00000373006 DRAM1Q8N682 238 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 AGBL5Q8NDL9 886 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 C22orf15Q8WYQ4 148 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 ZDHHC16Q969W1 377 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 DNPH1O43598 174 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 CA6P23280 308 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 GDF1P27539 372 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 GCSAMLQ5JQS6 135 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 TMEM14EPQ6UXP3 125 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 OR5A2Q8NGI9 324 aa11.55□□□□□ -0.56
USP49-201ENST00000373006 MRPS18CQ9Y3D5 142 aaKnown RBP11.55□□□□□ -0.56
USP49-201ENST00000373006 DOCK10Q96BY6 2186 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 C1QTNF9P0C862 333 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 CCKARP32238 428 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 BRS3P32247 399 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 CXCL12P48061 93 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 SAPCD1Q5SSQ6 148 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 KCNIP4Q6PIL6 250 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 VASH2Q86V25 355 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 ZNF808Q8N4W9 903 aaPredicted RBP11.54□□□□□ -0.56
USP49-201ENST00000373006 KCNE4Q8WWG9 221 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 NEIL1Q96FI4 390 aaPredicted RBP11.54□□□□□ -0.56
USP49-201ENST00000373006 BTF3L4Q96K17 158 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 TMEM204Q9BSN7 226 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 LIN7CQ9NUP9 197 aaKnown RBP11.54□□□□□ -0.56
USP49-201ENST00000373006 ZG16O60844 167 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 RBMXL2O75526 392 aaKnown RBP11.54□□□□□ -0.56
USP49-201ENST00000373006 KRTDAPP60985 99 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 RP1L1Q8IWN7 2480 aaPredicted RBP11.54□□□□□ -0.56
USP49-201ENST00000373006 DEPPQ9NTK1 212 aa11.54□□□□□ -0.56
USP49-201ENST00000373006 PINLYPA6NC86 204 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.53□□□□□ -0.56
USP49-201ENST00000373006 OTX2P32243 289 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 TUSC5Q8IXB3 177 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 ATOH7Q8N100 152 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 APOBEC3DQ96AK3 386 aaPredicted RBP11.53□□□□□ -0.56
USP49-201ENST00000373006 WDR54Q9H977 334 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 DSPP15924 2871 aaKnown RBP11.53□□□□□ -0.56
USP49-201ENST00000373006 SVILO95425 2214 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 CEP192Q8TEP8 1941 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 NDUFB4O95168 129 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 IGHEP01854 428 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 SRP14P37108 136 aaKnown RBP11.53□□□□□ -0.56
USP49-201ENST00000373006 ATP5G3P48201 142 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 LINC00205P59089 165 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 ZNF114Q8NC26 417 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 CIB3Q96Q77 187 aaPredicted RBP11.53□□□□□ -0.56
USP49-201ENST00000373006 IMMP2LQ96T52 175 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 TXN2Q99757 166 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 SAMD10Q9BYL1 202 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 PRR14LQ5THK1 2151 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 TRAV38-1A0A0B4J264 116 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 M0QZ24 198 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 COX5AP20674 150 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 EPHA8P29322 1005 aaPredicted RBP11.53□□□□□ -0.56
USP49-201ENST00000373006 C1orf194Q5T5A4 169 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 LINC01551Q86U37 167 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 OR10P1Q8NGE3 313 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms