RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TNRC6AQ8NDV7 1962 aaKnown RBP10.21□□□□□ -0.78
CLIP3-201ENST00000360535 TRAV38-1A0A0B4J264 116 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 C12orf77C9JDV5 145 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 OPN1MWP04001 364 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 OPN1MW2P0DN77 364 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 OPN1MW3P0DN78 364 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 SSX2Q16385 188 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 FBXW9Q5XUX1 488 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 H2BFWTQ7Z2G1 175 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 VKORC1L1Q8N0U8 176 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 RAB24Q969Q5 203 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 GPR87Q9BY21 358 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 PATZ1Q9HBE1 687 aaKnown RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 INTS1Q8N201 2190 aaKnown RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 HCFC1P51610 2035 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 A0A087X0M5 115 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 TRAV1-1A0A0B4J248 108 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 A0A1B0GX30 115 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 HBZP02008 142 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 COX5BP10606 129 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 MPV17P39210 176 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 RPL23P62829 140 aaKnown RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 NRN1LQ496H8 165 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 TMEM164Q5U3C3 297 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 SP5Q6BEB4 398 aaPredicted RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 DMRTC2Q8IXT2 367 aaPredicted RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 DTD1Q8TEA8 209 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 METRNQ9UJH8 293 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 POLDIP2Q9Y2S7 368 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 HIST1H1BP16401 226 aaKnown RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 NDUFB7P17568 137 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 PSG7Q13046 419 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 LRP11Q86VZ4 500 aa10.2□□□□□ -0.78
CLIP3-201ENST00000360535 NANOS1Q8WY41 292 aaKnown RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 PINX1Q96BK5 328 aaKnown RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 CDX2Q99626 313 aaPredicted RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 PSMG3Q9BT73 122 aaPredicted RBP10.2□□□□□ -0.78
CLIP3-201ENST00000360535 TPRP12270 2363 aaKnown RBP10.19□□□□□ -0.78
CLIP3-201ENST00000360535 SSTP61278 116 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 MSMO1Q15800 293 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 C21orf62-AS1Q17RA5 79 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 RNFT1Q5M7Z0 435 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 DHRS13Q6UX07 377 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 BCL2L2Q92843 193 aaPredicted RBP10.19□□□□□ -0.78
CLIP3-201ENST00000360535 MRPS18CQ9Y3D5 142 aaKnown RBP10.19□□□□□ -0.78
CLIP3-201ENST00000360535 SPTBN2O15020 2390 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.19□□□□□ -0.78
CLIP3-201ENST00000360535 WISP2O76076 250 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 SP1P08047 785 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 RNPS1Q15287 305 aaKnown RBP10.19□□□□□ -0.78
CLIP3-201ENST00000360535 LINC00596Q86U02 117 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 C5orf30Q96GV9 206 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 POM121Q96HA1 1249 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 PKIBQ9C010 78 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 OPA3Q9H6K4 179 aa10.19□□□□□ -0.78
CLIP3-201ENST00000360535 A0A1W2PNU3 283 aaPredicted RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 TSTD3H0UI37 97 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 TGFBR3Q03167 851 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 MRPL49Q13405 166 aaKnown RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 C14orf144Q96I85 54 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 TECTAO75443 2155 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 POLEQ07864 2286 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 DCHS1Q96JQ0 3298 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 ELOA3CA0A087WX78 387 aaPredicted RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 LRRC30A6NM36 301 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 SMPD2O60906 423 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 GYPAP02724 150 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 ZNF124Q15973 351 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 C1orf210Q8IVY1 113 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 DERL1Q9BUN8 251 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 TNCP24821 2201 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 PCNX1Q96RV3 2341 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 YLPM1P49750 1951 aaKnown RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 A0A1B0GUS0 222 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 KLRC4-KLRK1H3BQV0 150 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 IFNA10P01566 189 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 SLC25A6P12236 298 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 MPLP40238 635 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 FAM78BQ5VT40 261 aa10.18□□□□□ -0.78
CLIP3-201ENST00000360535 GTF3AQ92664 365 aaKnown RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 ACTR3CQ9C0K3 210 aaPredicted RBP10.18□□□□□ -0.78
CLIP3-201ENST00000360535 TRBV6-6A0A0A6YYG2 114 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 TRGV5A0A0B4J1U4 118 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 TMEM30CPA0ZSE6 113 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 RNF212BA8MTL3 300 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 C11orf94C9JXX5 98 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 SS18L1O75177 396 aaPredicted RBP10.17□□□□□ -0.78
CLIP3-201ENST00000360535 KBTBD11O94819 623 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 COX5AP20674 150 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 RND2P52198 227 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 CATR1Q13166 79 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 PMS2P11Q13670 270 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 Q6ZR03 302 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 ZNF645Q8N7E2 425 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 TMEM147Q9BVK8 224 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 SPRR3Q9UBC9 169 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 PITPNC1Q9UKF7 332 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 PLCE1Q9P212 2302 aa10.17□□□□□ -0.78
CLIP3-201ENST00000360535 CTXND1A0A1B0GTU2 59 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms