RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 OVCH2Q7RTZ1 564 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 RTN4RL2Q86UN3 420 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 TMEM183AQ8IXX5 376 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 SELENOHQ8IZQ5 122 aaKnown RBP5.57□□□□□ -1.52
UPF2-201ENST00000356352 SPSB4Q96A44 273 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 SPOCK3Q9BQ16 436 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 KCNE5Q9UJ90 142 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 MYO5AQ9Y4I1 1855 aaKnown RBP5.57□□□□□ -1.52
UPF2-201ENST00000356352 IGHV3OR16-12A0A075B7B8 117 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 TRAV39A0A0B4J263 110 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 LOC107984156A0A0G2JMH3 177 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 PATE3B3GLJ2 98 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 SYNGR3O43761 229 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 PRSS2P07478 247 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 FOLR2P14207 255 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 EFNB2P52799 333 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 TMEM177Q53S58 311 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 TMEM136Q6ZRR5 245 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 ARL17AQ8IVW1 177 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 ABHD12Q8N2K0 398 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 CYB561D1Q8N8Q1 229 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 OR51G1Q8NGK1 321 aa5.57□□□□□ -1.52
UPF2-201ENST00000356352 GDF9O60383 454 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 DNAL4O96015 105 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 IGKV1D-16P01601 117 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 ERGP11308 486 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 ATP5J2P56134 94 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 RPS11P62280 158 aaKnown RBP eCLIP5.56□□□□□ -1.52
UPF2-201ENST00000356352 ZNF56Q15929 161 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 C1orf100Q5SVJ3 147 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 OR10S1Q8NGN2 331 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 AQP3Q92482 292 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 PRELID3AQ96N28 172 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 UQCR10Q9UDW1 63 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 GPR132Q9UNW8 380 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 IGHV1-69-2A0A0G2JMI3 117 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 THY1P04216 161 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 IGSF11Q5DX21 431 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 SLC25A53Q5H9E4 307 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 PSMG4Q5JS54 123 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 FAM159AQ6UWV7 190 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 SMIM8Q96KF7 97 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 RHOVQ96L33 236 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 MRPL13Q9BYD1 178 aaKnown RBP5.56□□□□□ -1.52
UPF2-201ENST00000356352 PILRAQ9UKJ1 303 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 DTX4Q9Y2E6 619 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 KLHDC2Q9Y2U9 406 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 KCNAB3O43448 404 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 HLA-DRB1P01911 266 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 FCARP24071 287 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 LIMS1P48059 325 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 C10orf128Q5T292 105 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 HCP5Q6MZN7 132 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 CENPVQ7Z7K6 275 aaPredicted RBP5.56□□□□□ -1.52
UPF2-201ENST00000356352 LHFPL5Q8TAF8 219 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 HSPB9Q9BQS6 159 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 BCORQ6W2J9 1755 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 PLA2G10O15496 165 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 GZMMP51124 257 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 UCP3P55916 312 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 TNFRSF9Q07011 255 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 SLC25A34Q6PIV7 304 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 RGP1Q92546 391 aaPredicted RBP5.56□□□□□ -1.52
UPF2-201ENST00000356352 PGLYRP4Q96LB8 373 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 MRPL18Q9H0U6 180 aaKnown RBP5.56□□□□□ -1.52
UPF2-201ENST00000356352 CHODLQ9H9P2 273 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 LOC390937A0A1W2PQ73 354 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 LNP1A1A4G5 178 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 H7C2G1 150 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 SPINK2P20155 84 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 STARD6P59095 220 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 PLP1P60201 277 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 FGFRL1Q8N441 504 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.56□□□□□ -1.52
UPF2-201ENST00000356352 OR1P1Q8NH06 330 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 AQP10Q96PS8 301 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 C2orf88Q9BSF0 95 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 PLAC1Q9HBJ0 212 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 DLL3Q9NYJ7 618 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 KCNK7Q9Y2U2 307 aa5.56□□□□□ -1.52
UPF2-201ENST00000356352 AKAP11Q9UKA4 1901 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 A0A0G2JLM5 398 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 SLC25A17O43808 307 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 SCTP09683 121 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 HKR1P10072 659 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 RCC1P18754 421 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 NANOS3P60323 173 aaKnown RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 C10orf111Q8N326 155 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 TMEM52Q8NDY8 209 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 NEU4Q8WWR8 484 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 MARF1Q9Y4F3 1742 aaKnown RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 FBLL1A6NHQ2 334 aaKnown RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 MARCH11A6NNE9 402 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 H3BRM9 83 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 MUC1P15941 1255 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 CA7P43166 264 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 SMUG1Q53HV7 270 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 MIC13Q5XKP0 118 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 TMEM54Q969K7 222 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 HIST1H2BAQ96A08 127 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms