RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 FAM90A23PA8MXZ1 464 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 TRAPPC2LH3BP13 241 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 TNFP01375 233 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 HLA-DRB1P01911 266 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SERPINE2P07093 398 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 FAM90A15PP0C7V4 464 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 FAM90A13PP0C7W8 464 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 FAM90A14PP0C7W9 464 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 FAM90A24PP0C7X0 464 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 HNRNPA2B1P22626 353 aaKnown RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 RRADP55042 308 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 LGALS4P56470 323 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 C9orf135Q5VTT2 229 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 CRIP3Q6Q6R5 217 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OSR2Q8N2R0 312 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SCCPDHQ8NBX0 429 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR10G3Q8NGC4 313 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR10G6Q8NH81 332 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 THAP3Q8WTV1 239 aaPredicted RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 ST8SIA1Q92185 356 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR6C1Q96RD1 312 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 RBM24Q9BX46 236 aaKnown RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 GNB4Q9HAV0 340 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 ITPR1Q14643 2758 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 A0A1W2PS18 150 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 G3V4G9 280 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 MS4A18H0YCH9 400 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 CA2P00918 260 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 LINC00869P0C866 280 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 HLA-DOBP13765 273 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SRD5A2P31213 254 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 CEACAM3P40198 252 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 GUCA1AP43080 201 aaPredicted RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SUMO3P55854 103 aaPredicted RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SCGB2A2Q13296 93 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 MS4A18Q3C1V0 323 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 DCAF12Q5T6F0 453 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR10V1Q8NGI7 309 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SLC25A40Q8TBP6 338 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR1E3Q8WZA6 343 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 PIGTQ969N2 578 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 APOBEC3DQ96AK3 386 aaPredicted RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 BBC3Q96PG8 261 aaPredicted RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR4C12Q96R67 309 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 NXF5Q9H1B4 397 aaKnown RBP6.91□□□□□ -1.3
ATG4A-201ENST00000343524 C12orf49Q9H741 205 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 FAM60AQ9NP50 221 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 SLC7A10Q9NS82 523 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 PIGLQ9Y2B2 252 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 OR51B2Q9Y5P1 312 aa6.91□□□□□ -1.3
ATG4A-201ENST00000343524 CACNA1IQ9P0X4 2223 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 IGSF10Q6WRI0 2623 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 DSPP15924 2871 aaKnown RBP6.9□□□□□ -1.3
ATG4A-201ENST00000343524 IGKV1D-43A0A0B4J1Z2 117 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 PRSS38A1L453 326 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 C9JCJ5 164 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 H0YJW9 148 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 SH2D1BO14796 132 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 CLPSP04118 112 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 F2RP25116 425 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 CD1BP29016 333 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 GNB1P62873 340 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 RPS21P63220 83 aaKnown RBP6.9□□□□□ -1.3
ATG4A-201ENST00000343524 PRTGQ2VWP7 1150 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 PRAMEF20Q5VT98 475 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 HLA-DQA1Q5Y7H0 255 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 ZNF818PQ6ZRF7 136 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 GAPTQ8N292 157 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 OR5A2Q8NGI9 324 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 NAT6Q93015 286 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 QTRT1Q9BXR0 403 aaKnown RBP6.9□□□□□ -1.3
ATG4A-201ENST00000343524 ZNF442Q9H7R0 627 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 PNRC2Q9NPJ4 139 aaKnown RBP6.9□□□□□ -1.3
ATG4A-201ENST00000343524 TBC1D29Q9UFV1 150 aa6.9□□□□□ -1.3
ATG4A-201ENST00000343524 MYOFQ9NZM1 2061 aa6.9□□□□□ -1.31
ATG4A-201ENST00000343524 SLC22A20A6NK97 555 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 B4DGG1 531 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 PRRT4C9JH25 899 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 TGFBR3LH3BV60 316 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 LAMTOR5O43504 91 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 FREM3P0C091 2139 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 ANOS1P23352 680 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 IER3P46695 156 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 REG1BP48304 166 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 TGFBR3Q03167 851 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 PLCXD2Q0VAA5 305 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 BVES-AS1Q5T3Y7 98 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 AMMECR1LQ6DCA0 310 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 ACSM6Q6P461 480 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 ZNF295-AS1Q8N0V1 137 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 MTURNQ8N3F0 131 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 FER1L6-AS1Q8NA97 138 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 OR2Y1Q8NGV0 311 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 TMEM186Q96B77 213 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 BORCS8Q96FH0 119 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 AP1S3Q96PC3 154 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 PMCHL2Q9BQD1 86 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 PNO1Q9NRX1 252 aaKnown RBP6.89□□□□□ -1.31
ATG4A-201ENST00000343524 C1RLQ9NZP8 487 aa6.89□□□□□ -1.31
ATG4A-201ENST00000343524 DEC1Q9P2X7 70 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms