RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ZNF793Q6ZN11 406 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 OPN3Q9H1Y3 402 aaPredicted RBP12.45□□□□□ -0.42
COL7A1-201ENST00000328333 ZFP64Q9NPA5 681 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 ZSWIM8A7E2V4 1837 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 THSD4Q6ZMP0 1018 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 LRTM2Q8N967 370 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 OR4X2Q8NGF9 303 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 WFDC5Q8TCV5 224 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF714Q96N38 554 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 TLNRD1Q9H1K6 362 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 CLEC5AQ9NY25 188 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 KIAA0040Q15053 153 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 DEFB127Q9H1M4 99 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 RCC1P18754 421 aaPredicted RBP12.45□□□□□ -0.42
COL7A1-201ENST00000328333 TM4SF20Q53R12 229 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 SPINK9Q5DT21 86 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 HEXA-AS1Q9H8Q6 139 aa12.45□□□□□ -0.42
COL7A1-201ENST00000328333 A8MXK9 166 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ARF6P62330 175 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ATG4DQ86TL0 474 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 HIST1H2BAQ96A08 127 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 PPIHO43447 177 aaKnown RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 HKR1P10072 659 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF430Q9H8G1 570 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 A0A1B0GWB2 263 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ERVH48-1M5A8F1 160 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 PSG2P11465 335 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 DEFB103AP81534 67 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 RLFQ13129 1914 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 CEACAM5P06731 702 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 IFI6P09912 130 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF137PP52743 207 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 AQP3Q92482 292 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 C5orf30Q96GV9 206 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 MARS2Q96GW9 593 aaKnown RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 INSIG2Q9Y5U4 225 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 DLL1O00548 723 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 RPL8P62917 257 aaKnown RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 MESTQ5EB52 335 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 C8orf82Q6P1X6 216 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 EBLN2Q6P2I7 272 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 OBSL1O75147 1896 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 SSPNQ14714 243 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 LINC01465Q8N7H1 131 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 SIGMAR1Q99720 223 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 A0A1B0GTL3 188 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ODAMA1E959 279 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 NUDT10Q8NFP7 164 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 TAF15Q92804 592 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 VSTM2LQ96N03 204 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 LINC01549A6NIU2 74 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 CLDN14O95500 239 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 CA1P00915 261 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 CXorf67Q86X51 503 aaPredicted RBP12.44□□□□□ -0.42
COL7A1-201ENST00000328333 MMD2Q8IY49 270 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 ABHD3Q8WU67 409 aa12.44□□□□□ -0.42
COL7A1-201ENST00000328333 SEC11AP67812 179 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 CTAG1AP78358 180 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 RGP1Q92546 391 aaPredicted RBP12.43□□□□□ -0.42
COL7A1-201ENST00000328333 NDUFAF3Q9BU61 184 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 PARLQ9H300 379 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 C10orf111Q8N326 155 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 RFESDQ8TAC1 157 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 CHODLQ9H9P2 273 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 CADM4Q8NFZ8 388 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 SSBP4Q9BWG4 385 aaPredicted RBP12.43□□□□□ -0.42
COL7A1-201ENST00000328333 OR2H1Q9GZK4 316 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 IGHV3-64DA0A0J9YX35 117 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 ROM1Q03395 351 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 C8orf44Q96CB5 159 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 COL24A1Q17RW2 1714 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 SPTY2D1-AS1A0A0U1RR47 76 aa12.43□□□□□ -0.42
COL7A1-201ENST00000328333 DYNLRB2Q8TF09 96 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 TBL2Q9Y4P3 447 aaKnown RBP12.42□□□□□ -0.42
COL7A1-201ENST00000328333 SDHCQ99643 169 aaPredicted RBP12.42□□□□□ -0.42
COL7A1-201ENST00000328333 NCOR1P1Q9H4R4 102 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 SMIM8Q96KF7 97 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 SPANXCQ9NY87 97 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 KLK13Q9UKR3 277 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 VSIG8P0DPA2 414 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 OR2K2Q8NGT1 345 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 SAXO1Q8IYX7 474 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 GREB1LQ9C091 1923 aaPredicted RBP12.42□□□□□ -0.42
COL7A1-201ENST00000328333 MT-CO3P00414 261 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 KLK2P20151 261 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 SOCS1O15524 211 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 FCGR3AP08637 254 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 DNAJC4Q9NNZ3 241 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 IL36RNQ9UBH0 155 aa12.42□□□□□ -0.42
COL7A1-201ENST00000328333 A0A1B0GTH9 108 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 LPAL2Q16609 132 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 SMOC1Q9H4F8 434 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 C6orf106Q9H6K1 298 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 CCL28Q9NRJ3 127 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 COL5A3P25940 1745 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 TRBV5-3A0A0A0MS03 114 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 TRAV8-7A0A075B6U6 113 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 F12P00748 615 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 SRFP11831 508 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms