RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 TXNDC17Q9BRA2 123 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 SCNM1Q9BWG6 230 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 AURKAIP1Q9NWT8 199 aaPredicted RBP13.65□□□□□ -0.22
USP42-201ENST00000306177 RAMP1O60894 148 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 ID1P41134 155 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 SUCLG1P53597 346 aaKnown RBP13.65□□□□□ -0.22
USP42-201ENST00000306177 OR2D3Q8NGH3 330 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 SIGLEC12Q96PQ1 595 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 TMEM140Q9NV12 185 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 GREB1Q4ZG55 1949 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 SCGB1C2P0DMR2 95 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 UNC119Q13432 240 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 TMEM30BQ3MIR4 351 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 PRR19A6NJB7 356 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 UCP3P55916 312 aa13.65□□□□□ -0.22
USP42-201ENST00000306177 TAF15Q92804 592 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP42-201ENST00000306177 LINC00869P0C866 280 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 RPL29P47914 159 aaKnown RBP13.64□□□□□ -0.23
USP42-201ENST00000306177 SLC16A13Q7RTY0 426 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 OR4A5Q8NH83 315 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 ZNF552Q9H707 407 aaPredicted RBP13.64□□□□□ -0.23
USP42-201ENST00000306177 ANKRD36A6QL64 1941 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 TRAV34A0A0B4J273 112 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 APCSP02743 223 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 TRAV20A0A0B4J274 112 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 MARCH11A6NNE9 402 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 GFRA3O60609 400 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 OR5AU1Q8NGC0 362 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 OR52M1Q8NGK5 317 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 MAP1LC3CQ9BXW4 147 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 SYNGR3O43761 229 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 HSPE1P61604 102 aaKnown RBP13.64□□□□□ -0.23
USP42-201ENST00000306177 LINC00114Q6XXX2 140 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 DYNLRB2Q8TF09 96 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 IL36RNQ9UBH0 155 aa13.64□□□□□ -0.23
USP42-201ENST00000306177 ZNF729A6NN14 1252 aaPredicted RBP13.63□□□□□ -0.23
USP42-201ENST00000306177 PTBP3O95758 552 aaKnown RBP13.63□□□□□ -0.23
USP42-201ENST00000306177 H2BFSP57053 126 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 LOXL3P58215 753 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 LRRC75BQ2VPJ9 315 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 ELOVL5Q9NYP7 299 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 CHD5Q8TDI0 1954 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 FAM209AQ5JX71 171 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 HCP5Q6MZN7 132 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 ZNF818PQ6ZRF7 136 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 PRNTQ86SH4 94 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 LSM10Q969L4 123 aaKnown RBP13.63□□□□□ -0.23
USP42-201ENST00000306177 HSPB1P04792 205 aaKnown RBP13.63□□□□□ -0.23
USP42-201ENST00000306177 ZNF735P0CB33 412 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 COX6B1P14854 86 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 GLIPR1P48060 266 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 TNFRSF9Q07011 255 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 TUSC1Q2TAM9 212 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 SMUG1Q53HV7 270 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 MIOXQ9UGB7 285 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 PITPNC1Q9UKF7 332 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 SCN5AQ14524 2016 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 MELTFP08582 738 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 ID4P47928 161 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 GPHA2Q96T91 129 aa13.63□□□□□ -0.23
USP42-201ENST00000306177 PPIAL4CA0A0B4J2A2 164 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 C1QL1O75973 258 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 PPIAL4GP0DN37 164 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 MEF2BQ02080 365 aaPredicted RBP13.62□□□□□ -0.23
USP42-201ENST00000306177 TMEM187Q14656 261 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 ASPHD2Q6ICH7 369 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 NCOR1O75376 2440 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 TRBV23-1A0A0A0MS06 115 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 CELA3AP09093 270 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 OR9G1Q8NH87 305 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 SGMS2Q8NHU3 365 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 ZNF430Q9H8G1 570 aaPredicted RBP13.62□□□□□ -0.23
USP42-201ENST00000306177 FAM3BP58499 235 aaPredicted RBP13.62□□□□□ -0.23
USP42-201ENST00000306177 RPS11P62280 158 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP42-201ENST00000306177 WFDC3Q8IUB2 231 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 GDF9O60383 454 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 ZIC3O60481 467 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 OR2A4O95047 310 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 F12P00748 615 aaPredicted RBP13.62□□□□□ -0.23
USP42-201ENST00000306177 HTN1P15515 57 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 WDFY1Q8IWB7 410 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 FADS6Q8N9I5 356 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 OR2A7Q96R45 310 aa13.62□□□□□ -0.23
USP42-201ENST00000306177 TMSB15BA0A087X1C1 80 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 SLC25A17O43808 307 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 COMPP49747 757 aaPredicted RBP13.61□□□□□ -0.23
USP42-201ENST00000306177 NRN1LQ496H8 165 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 MRPL14Q6P1L8 145 aaKnown RBP13.61□□□□□ -0.23
USP42-201ENST00000306177 PQLC2Q6ZP29 291 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 OR4C5Q8NGB2 326 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 FLVCR1-AS1Q8TAF5 88 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 IMMP1LQ96LU5 166 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 OR4C12Q96R67 309 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 MTCL1Q9Y4B5 1905 aaKnown RBP13.61□□□□□ -0.23
USP42-201ENST00000306177 DOCK6Q96HP0 2047 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 IGKV1D-43A0A0B4J1Z2 117 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 hCG_38984A0A1B0GV85 526 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 SHISA3A0PJX4 238 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 S1PR2O95136 353 aa13.61□□□□□ -0.23
USP42-201ENST00000306177 NDUFB4O95168 129 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms