RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MSGN1A6NI15 193 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 K7EPK0 472 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 F2RL2O00254 374 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 TMPRSS2O15393 492 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 FAM71E2Q8N5Q1 922 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 ZNF596Q8TC21 504 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 AUP1Q9Y679 476 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 PKD1L2Q7Z442 2459 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 TRGV10A0A0A0MS01 117 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 ADAM20O43506 726 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 CGB3P0DN86 165 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 CGB7P0DN87 165 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 ROS1P08922 2347 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 hCG_1809904A0A1W2PP81 198 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 A0A1W2PPE2 198 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 A0A1W2PR64 198 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 LINC00862A6NCI5 91 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 ITGB1BP1O14713 200 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 CLDN14O95500 239 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 VAMP2P63027 116 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 C5orf30Q96GV9 206 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 ZNF471Q9BX82 626 aaPredicted RBP11.82□□□□□ -0.52
C9orf3-202ENST00000297979 PSG11Q9UQ72 335 aa11.82□□□□□ -0.52
C9orf3-202ENST00000297979 NBASA2RRP1 2371 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 ARFGEF3Q5TH69 2177 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 IGHV1-69-2A0A0G2JMI3 117 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 CLEC18AA5D8T8 446 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 F5H0A9 414 aaPredicted RBP11.81□□□□□ -0.52
C9orf3-202ENST00000297979 ST8SIA3O43173 380 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 YPEL1O60688 119 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 ZG16O60844 167 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 LOXL3P58215 753 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 ALKAL2Q6UX46 152 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 CLEC18CQ8NCF0 446 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 YPEL2Q96QA6 119 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 BIN3Q9NQY0 253 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 NBEAQ8NFP9 2946 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 DSCAML1Q8TD84 2053 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 KBTBD11-OT1A0A1B0GTJ5 212 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 EIF4EBP1Q13541 118 aaPredicted RBP11.81□□□□□ -0.52
C9orf3-202ENST00000297979 C17orf58Q2M2W7 97 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 MORN2Q502X0 79 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 SCARB1Q8WTV0 552 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 ITLN2Q8WWU7 325 aaPredicted RBP11.81□□□□□ -0.52
C9orf3-202ENST00000297979 CLN8Q9UBY8 286 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 POMT1Q9Y6A1 747 aa11.81□□□□□ -0.52
C9orf3-202ENST00000297979 RPS10-NUDT3A0A1W2PQS6 291 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 E5RGE8 158 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 IFNA4P05014 189 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 HKR1P10072 659 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 AGAP20933 346 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 CDKN1BP46527 198 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 RBX1P62877 108 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 CATR1Q13166 79 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 CLLU1Q5K131 121 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 TCF23Q7RTU1 214 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 AGMATQ9BSE5 352 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 GSX2Q9BZM3 304 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 SLC25A10Q9UBX3 287 aaPredicted RBP11.8□□□□□ -0.52
C9orf3-202ENST00000297979 NSG2Q9Y328 171 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 ANKHD1Q8IWZ3 2542 aaKnown RBP11.8□□□□□ -0.52
C9orf3-202ENST00000297979 IGKV1-39P01597 117 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 IGKV1D-39P04432 117 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 OMGP23515 440 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 NKX2-1P43699 371 aaPredicted RBP11.8□□□□□ -0.52
C9orf3-202ENST00000297979 ZNF585BQ52M93 769 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 C22orf15Q8WYQ4 148 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 ABHD14BQ96IU4 210 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 PKDREJQ9NTG1 2253 aa11.8□□□□□ -0.52
C9orf3-202ENST00000297979 LIPFP07098 398 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 RPL12P30050 165 aaKnown RBP11.79□□□□□ -0.52
C9orf3-202ENST00000297979 PPOXP50336 477 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 FGFRL1Q8N441 504 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 CORO2AQ92828 525 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 PLEKHA2Q9HB19 425 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 BTNL3Q6UXE8 466 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 OR5T1Q8NG75 326 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 LSM10Q969L4 123 aaKnown RBP11.79□□□□□ -0.52
C9orf3-202ENST00000297979 C2orf88Q9BSF0 95 aa11.79□□□□□ -0.52
C9orf3-202ENST00000297979 RCL1Q9Y2P8 373 aaKnown RBP11.79□□□□□ -0.52
C9orf3-202ENST00000297979 TPRP12270 2363 aaKnown RBP11.79□□□□□ -0.52
C9orf3-202ENST00000297979 hADV38S2A0JD32 116 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 A4D1N5 150 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 TNFRSF13BO14836 293 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-202ENST00000297979 SLC25A6P12236 298 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 GPR12P47775 334 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 RPL30P62888 115 aaKnown RBP11.78□□□□□ -0.52
C9orf3-202ENST00000297979 ZNF66Q6ZN08 573 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 SFT2D1Q8WV19 159 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 GPR146Q96CH1 333 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 GFOD1Q9NXC2 390 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 A0A0G2JRQ6 117 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 A0A1B0GU03 582 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 EPHA1P21709 976 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 AKR1C2P52895 323 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 UBE2G2P60604 165 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 STOML3Q8TAV4 291 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 PCNPQ8WW12 178 aaKnown RBP11.78□□□□□ -0.52
C9orf3-202ENST00000297979 TCTEX1D2Q8WW35 142 aa11.78□□□□□ -0.52
C9orf3-202ENST00000297979 RHOVQ96L33 236 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms