RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 TNFSF11O14788 317 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 SYNGR2O43760 224 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 ZNF737O75373 536 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 CBR3O75828 277 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 MBP02144 154 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 ATP6V1FQ16864 119 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 WIPI1Q5MNZ9 446 aaPredicted RBP8.72□□□□□ -1.01
UPF3B-201ENST00000276201 RIPPLY2Q5TAB7 128 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 PLCXD3Q63HM9 321 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 GBGT1Q8N5D6 347 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 C1QTNF5Q9BXJ0 243 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 CCL28Q9NRJ3 127 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 HECTD1Q9ULT8 2610 aa8.72□□□□□ -1.01
UPF3B-201ENST00000276201 OPN1LWP04000 364 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 ZNF774Q6NX45 483 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 COLCA1Q6ZS62 124 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 YRDCQ86U90 279 aaKnown RBP8.71□□□□□ -1.01
UPF3B-201ENST00000276201 ZNF611Q8N823 705 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 OR51I2Q9H344 312 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 PLK3Q9H4B4 646 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 LAMP3Q9UQV4 416 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 MED12Q93074 2177 aa8.71□□□□□ -1.01
UPF3B-201ENST00000276201 COL12A1Q99715 3063 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 SPTBN1Q01082 2364 aaKnown RBP8.71□□□□□ -1.02
UPF3B-201ENST00000276201 ASH1LQ9NR48 2969 aaKnown RBP8.71□□□□□ -1.02
UPF3B-201ENST00000276201 CTXND1A0A1B0GTU2 59 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 ZG16O60844 167 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 OR7C1O76099 320 aaPredicted RBP8.71□□□□□ -1.02
UPF3B-201ENST00000276201 GZMHP20718 246 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 SRD5A2P31213 254 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 PSMB3P49720 205 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 RAC1P63000 192 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 USF2Q15853 346 aaPredicted RBP8.71□□□□□ -1.02
UPF3B-201ENST00000276201 BRICD5Q6PL45 260 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 LCN15Q6UWW0 184 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 ZNF66Q6ZN08 573 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 SSX7Q7RTT5 188 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 HAPLN4Q86UW8 402 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 OR2T10Q8NGZ9 312 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 SARAFQ96BY9 339 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 RBM14Q96PK6 669 aaKnown RBP8.71□□□□□ -1.02
UPF3B-201ENST00000276201 RSG1Q9BU20 258 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 OR2H1Q9GZK4 316 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 WNT5BQ9H1J7 359 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 PSENENQ9NZ42 101 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 GAB2Q9UQC2 676 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 OR2W1Q9Y3N9 320 aa8.71□□□□□ -1.02
UPF3B-201ENST00000276201 IGKV1-6A0A0C4DH72 117 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 A0A0G2JRQ6 117 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 EREGO14944 169 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 SOX15O60248 233 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 ZIC3O60481 467 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 SCTP09683 121 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 APLNRP35414 380 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 ADORA2A-AS1P86434 159 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 PAX5Q02548 391 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 ADIRFQ15847 76 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 RPRMLQ8N4K4 120 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 TAF15Q92804 592 aaKnown RBP eCLIP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 SNHG12Q9BXW3 62 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 RBKSQ9H477 322 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 VSIRQ9H7M9 311 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 FLNBO75369 2602 aaKnown RBP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 KIAA2026Q5HYC2 2103 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 UTP20O75691 2785 aaKnown RBP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 DEGS1O15121 323 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 CYTIPO60759 359 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 HLA-HP01893 362 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 SNRPCP09234 159 aaKnown RBP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 ZNF32P17041 273 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 B3GALT5-AS1P59052 145 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 RAC3P60763 192 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 PSG4Q00888 419 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 ARL16Q0P5N6 197 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 TMEM267Q0VDI3 215 aaPredicted RBP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 KCNIP4Q6PIL6 250 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 TMEM14EPQ6UXP3 125 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 CALHM1Q8IU99 346 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 MKXQ8IYA7 352 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 PSMG3-AS1Q96PY0 264 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 VKORC1Q9BQB6 163 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 SLC39A9Q9NUM3 307 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 MRPS18CQ9Y3D5 142 aaKnown RBP8.7□□□□□ -1.02
UPF3B-201ENST00000276201 PCNX1Q96RV3 2341 aa8.7□□□□□ -1.02
UPF3B-201ENST00000276201 CHD3Q12873 2000 aaKnown RBP8.69□□□□□ -1.02
UPF3B-201ENST00000276201 ICE1Q9Y2F5 2266 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 TMPRSS2O15393 492 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 MLNRO43193 412 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 SERPINE2P07093 398 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 OR10J1P30954 320 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 GFRA1P56159 465 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 UBE2NP61088 152 aaKnown RBP8.69□□□□□ -1.02
UPF3B-201ENST00000276201 RPL15P61313 204 aaKnown RBP8.69□□□□□ -1.02
UPF3B-201ENST00000276201 P2RY6Q15077 328 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 TMEM144Q7Z5S9 345 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 MRPL30Q8TCC3 161 aaKnown RBP8.69□□□□□ -1.02
UPF3B-201ENST00000276201 ITLN2Q8WWU7 325 aaPredicted RBP8.69□□□□□ -1.02
UPF3B-201ENST00000276201 LHX4Q969G2 390 aa8.69□□□□□ -1.02
UPF3B-201ENST00000276201 FAM215AQ9Y5M1 114 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms