RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 SSX5O60225 188 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 SOX15O60248 233 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 OR5H8P0DN80 308 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 DTYMKP23919 212 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 TALDO1P37837 337 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 CRIP2P52943 208 aaPredicted RBP11.24□□□□□ -0.61
HMGN3-201ENST00000275036 CX3CL1P78423 397 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 ZNF260Q3ZCT1 412 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 H1FOOQ8IZA3 346 aaPredicted RBP11.24□□□□□ -0.61
HMGN3-201ENST00000275036 MINDY2Q8NBR6 621 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 CLCC1Q96S66 551 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 RNF5Q99942 180 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 TPSG1Q9NRR2 321 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 RHBDL2Q9NX52 303 aa11.24□□□□□ -0.61
HMGN3-201ENST00000275036 METTL1Q9UBP6 276 aaKnown RBP11.24□□□□□ -0.61
HMGN3-201ENST00000275036 DUS4LO95620 317 aaKnown RBP11.23□□□□□ -0.61
HMGN3-201ENST00000275036 IGLV2-23P01705 113 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 RPS16P62249 146 aaKnown RBP11.23□□□□□ -0.61
HMGN3-201ENST00000275036 ARL6IP1Q15041 203 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 PLGLAQ15195 96 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 ECSCRQ19T08 205 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 IDNKQ5T6J7 187 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 ZNF660Q6AZW8 331 aaPredicted RBP11.23□□□□□ -0.61
HMGN3-201ENST00000275036 PDPNQ86YL7 162 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 ZNF491Q8N8L2 437 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 C4orf3Q8WVX3 66 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 GINS4Q9BRT9 223 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 FAM103A1Q9BTL3 118 aaKnown RBP11.23□□□□□ -0.61
HMGN3-201ENST00000275036 ST6GALNAC5Q9BVH7 336 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 GNB4Q9HAV0 340 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 SLC35D1Q9NTN3 355 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 NUBP2Q9Y5Y2 271 aa11.23□□□□□ -0.61
HMGN3-201ENST00000275036 CA2P00918 260 aa11.22□□□□□ -0.61
HMGN3-201ENST00000275036 APOA2P02652 100 aa11.22□□□□□ -0.61
HMGN3-201ENST00000275036 SSBP2P81877 361 aaPredicted RBP11.22□□□□□ -0.61
HMGN3-201ENST00000275036 TSPAN14Q8NG11 270 aa11.22□□□□□ -0.61
HMGN3-201ENST00000275036 CASTOR1Q8WTX7 329 aa11.22□□□□□ -0.61
HMGN3-201ENST00000275036 YIPF6Q96EC8 236 aa11.22□□□□□ -0.61
HMGN3-201ENST00000275036 A3GALT2U3KPV4 340 aa11.22□□□□□ -0.61
HMGN3-201ENST00000275036 A0A1W2PN81 502 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 LINC00473A8K010 186 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 I3L521 148 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 J3QRK9 145 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 ARPC1BO15143 372 aaKnown RBP11.21□□□□□ -0.61
HMGN3-201ENST00000275036 SLC25A17O43808 307 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 SCGNO76038 276 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 SPDEFO95238 335 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 CRYGBP07316 175 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 CHRNA7P36544 502 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 RAB9AP51151 201 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 SCAND1P57086 179 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 RAB25P57735 213 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 FHL3Q13643 280 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 ASPHD1Q5U4P2 390 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 BVESQ8NE79 360 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 DDB2Q92466 427 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 FLYWCH2Q96CP2 140 aaKnown RBP11.21□□□□□ -0.61
HMGN3-201ENST00000275036 UBE2E2Q96LR5 201 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 TSNAXQ99598 290 aaKnown RBP11.21□□□□□ -0.61
HMGN3-201ENST00000275036 DCSTAMPQ9H295 470 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 ETV7Q9Y603 341 aa11.21□□□□□ -0.61
HMGN3-201ENST00000275036 SORL1Q92673 2214 aa11.21□□□□□ -0.62
HMGN3-201ENST00000275036 TRAV18A0A075B6X5 111 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 A0A087WXM4 84 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 IGKV1D-13A0A0B4J2D9 117 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 SRRM4A7MD48 611 aaKnown RBP11.2□□□□□ -0.62
HMGN3-201ENST00000275036 TNFAIP8O95379 198 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 IGKV1-13P0DP09 117 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 NFYAP23511 347 aaPredicted RBP11.2□□□□□ -0.62
HMGN3-201ENST00000275036 DUTP33316 252 aaKnown RBP11.2□□□□□ -0.62
HMGN3-201ENST00000275036 LUMP51884 338 aaPredicted RBP11.2□□□□□ -0.62
HMGN3-201ENST00000275036 GNG2P59768 71 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 GNB1P62873 340 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 PITPNAQ00169 270 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 PJVKQ0ZLH3 352 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 TMEM65Q6PI78 240 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 ZNF562Q6V9R5 426 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 PPP1R27Q86WC6 154 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 OR11H1Q8NG94 326 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 ABHD5Q8WTS1 349 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 OR5B12Q96R08 314 aa11.2□□□□□ -0.62
HMGN3-201ENST00000275036 FOXA2Q9Y261 457 aaPredicted RBP11.2□□□□□ -0.62
HMGN3-201ENST00000275036 RBM7Q9Y580 266 aaKnown RBP11.2□□□□□ -0.62
HMGN3-201ENST00000275036 TRIM64CA6NLI5 447 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 AIREO43918 545 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 IGLV2-14P01704 120 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 HLA-DQB1P01920 261 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 PTHLHP12272 177 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 RPS19P39019 145 aaKnown RBP11.19□□□□□ -0.62
HMGN3-201ENST00000275036 LSM3P62310 102 aaKnown RBP11.19□□□□□ -0.62
HMGN3-201ENST00000275036 RUNX1Q01196 453 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 MRGPRG-AS1Q2M3A8 158 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 TMEM177Q53S58 311 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 CNIH2Q6PI25 160 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 GVQW1Q8N7I0 195 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 LFNGQ8NES3 379 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 HARBI1Q96MB7 349 aa11.19□□□□□ -0.62
HMGN3-201ENST00000275036 MCRIP2Q9BUT9 160 aaKnown RBP11.19□□□□□ -0.62
HMGN3-201ENST00000275036 ALX4Q9H161 411 aaPredicted RBP11.19□□□□□ -0.62
HMGN3-201ENST00000275036 ANXA10Q9UJ72 324 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms