RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RBMXL2O75526 392 aaKnown RBP8.47□□□□□ -1.05
LIG3-201ENST00000262327 PTBP3O95758 552 aaKnown RBP8.47□□□□□ -1.05
LIG3-201ENST00000262327 GZMBP10144 247 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 SLC38A11Q08AI6 406 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 OR1C1Q15619 314 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 PRSS8Q16651 343 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 ABHD17BQ5VST6 288 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 ZNF826PQ6ZT77 177 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 MDP1Q86V88 176 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 ZNF573Q86YE8 665 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 FGFRL1Q8N441 504 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 DRAM1Q8N682 238 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 TMEM251Q8N6I4 163 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 SNIP1Q8TAD8 396 aaKnown RBP8.47□□□□□ -1.05
LIG3-201ENST00000262327 ZDHHC16Q969W1 377 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 FER1L6-AS2Q96M78 137 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 WFIKKN1Q96NZ8 548 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 SDF2L1Q9HCN8 221 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 CISD1Q9NZ45 108 aaKnown RBP8.47□□□□□ -1.05
LIG3-201ENST00000262327 ELOA3CA0A087WX78 387 aaPredicted RBP8.47□□□□□ -1.05
LIG3-201ENST00000262327 IGHV3-43A0A0B4J1X8 118 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 TMEM210A6NLX4 147 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 ZNF705GA8MUZ8 300 aaPredicted RBP8.47□□□□□ -1.05
LIG3-201ENST00000262327 WNT9BO14905 357 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 IGHV3-43DP0DP04 118 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 COL8A2P25067 703 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 LTC4SQ16873 150 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 Q6P435 159 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 ACSM6Q6P461 480 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 C16orf82Q7Z2V1 217 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 OR1L1Q8NH94 360 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 TMEM45BQ96B21 275 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 WDYHV1Q96HA8 205 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 ABHD14BQ96IU4 210 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 OR2J1Q9GZK6 312 aa8.47□□□□□ -1.05
LIG3-201ENST00000262327 DEFB108AA8MXU0 73 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 IFNL4K9M1U5 179 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 NXPH2O95156 264 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 CYB5R3P00387 301 aaPredicted RBP8.46□□□□□ -1.05
LIG3-201ENST00000262327 IDH3GP51553 393 aaPredicted RBP8.46□□□□□ -1.05
LIG3-201ENST00000262327 RPL30P62888 115 aaKnown RBP8.46□□□□□ -1.05
LIG3-201ENST00000262327 LRRC75BQ2VPJ9 315 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 SAXO1Q8IYX7 474 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 OR52L2PQ8NGH6 319 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 IL22RA2Q969J5 263 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 FAM122AQ96E09 287 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 WDR61Q9GZS3 305 aaKnown RBP8.46□□□□□ -1.05
LIG3-201ENST00000262327 OR51I2Q9H344 312 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 LAMP3Q9UQV4 416 aa8.46□□□□□ -1.05
LIG3-201ENST00000262327 CHTOPQ9Y3Y2 248 aaKnown RBP8.46□□□□□ -1.05
LIG3-201ENST00000262327 SMG1Q96Q15 3661 aaKnown RBP8.46□□□□□ -1.06
LIG3-201ENST00000262327 IGHV3-13P01766 116 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 IGHV3-7P01780 117 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 OR3A1P47881 315 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 JOSD1Q15040 202 aaPredicted RBP8.46□□□□□ -1.06
LIG3-201ENST00000262327 SCCPDHQ8NBX0 429 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 RFESDQ8TAC1 157 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 TAF15Q92804 592 aaKnown RBP eCLIP8.46□□□□□ -1.06
LIG3-201ENST00000262327 DCHS1Q96JQ0 3298 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 HIST1H2BLQ99880 126 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 FAM173AQ9BQD7 235 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 FZR1Q9UM11 496 aa8.46□□□□□ -1.06
LIG3-201ENST00000262327 IGKV3D-15A0A087WSY6 115 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 RPLP1P05386 114 aaKnown RBP8.45□□□□□ -1.06
LIG3-201ENST00000262327 GZMHP20718 246 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 HBG1P69891 147 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 HBG2P69892 147 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 TFF3Q07654 80 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 OR4F5Q8NH21 305 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 OR4X1Q8NH49 305 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 OR4F4Q96R69 305 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 DIRC2Q96SL1 478 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 OR2D2Q9H210 308 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 CADP27708 2225 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 A0A1W2PPQ1 181 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 AESQ08117 197 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 P2RY6Q15077 328 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 TMEM41BQ5BJD5 291 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 ATP1A1-AS1Q5TC04 95 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 NCR3LG1Q68D85 454 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 GCNT2Q8N0V5 402 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 ABI3Q9P2A4 366 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 VAX2Q9UIW0 290 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 ITGB1BP1O14713 200 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 PSPNO60542 156 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 ZG16O60844 167 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 ARR3P36575 388 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 SOX8P57073 446 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 COL10A1Q03692 680 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 SRSF7Q16629 238 aaKnown RBP eCLIP8.45□□□□□ -1.06
LIG3-201ENST00000262327 TMEM37Q8WXS4 190 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 C5orf30Q96GV9 206 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 PCGF1Q9BSM1 259 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 LINC00470Q9BZP3 86 aa8.45□□□□□ -1.06
LIG3-201ENST00000262327 PTPRBP23467 1997 aa8.44□□□□□ -1.06
LIG3-201ENST00000262327 TRAV1-1A0A0B4J248 108 aa8.44□□□□□ -1.06
LIG3-201ENST00000262327 S1PR2O95136 353 aa8.44□□□□□ -1.06
LIG3-201ENST00000262327 CRYAAP02489 173 aa8.44□□□□□ -1.06
LIG3-201ENST00000262327 UBE2G2P60604 165 aa8.44□□□□□ -1.06
LIG3-201ENST00000262327 RNPS1Q15287 305 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms