RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SPG11Q96JI7 2443 aa9.69□□□□□ -0.86
VPS4A-201ENST00000254950 CD37P11049 281 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 FAM74A1Q5RGS3 127 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 Q6ZRG5 221 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 CABLES2Q9BTV7 478 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 SIRT7Q9NRC8 400 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 YPEL1O60688 119 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 ARG1P05089 322 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 FABP1P07148 127 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 H2AFB1P0C5Y9 115 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 CCL3L1P16619 93 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 HTR1DP28221 377 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 RAB5CP51148 216 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 TAS2R30P59541 319 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 SFT2D1Q8WV19 159 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 GPR146Q96CH1 333 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 YPEL2Q96QA6 119 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 SSBP3Q9BWW4 388 aaPredicted RBP9.68□□□□□ -0.86
VPS4A-201ENST00000254950 CHODLQ9H9P2 273 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 WNK2Q9Y3S1 2297 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 CEACAM18A8MTB9 384 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 CHD8Q9HCK8 2581 aa9.68□□□□□ -0.86
VPS4A-201ENST00000254950 IGKV1D-17A0A075B6S4 117 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 UBE2L5PA0A1B0GUS4 154 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 ERVK11-1P61568 191 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 ZNF345Q14585 488 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 RPL7L1Q6DKI1 246 aaKnown RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 DHRS7BQ6IAN0 325 aaPredicted RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 Q6ZS49 121 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 CCDC28AQ8IWP9 274 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 LFNGQ8NES3 379 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 FAM168AQ92567 244 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 LSM10Q969L4 123 aaKnown RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 MARC2Q969Z3 335 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 MS4A7Q9GZW8 240 aaPredicted RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 IFT22Q9H7X7 185 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 WASHC3Q9Y3C0 194 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 F2RL2O00254 374 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 CFHR2P36980 270 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 UQCRFS1P47985 274 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 TNXAQ16473 311 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 ATP6V1FQ16864 119 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 RBMS3Q6XE24 437 aaKnown RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 C20orf204Q6ZNR8 217 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 LYPD6Q86Y78 171 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 OR1L8Q8NGR8 309 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 LEUTXA8MZ59 168 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 UMAD1C9J7I0 102 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 S1PR2O95136 353 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 MBP02144 154 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 MBPP02686 304 aaPredicted RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 FGF7P21781 194 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 S100A7P31151 101 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 PPOXP50336 477 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 EFNA4P52798 201 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 UBE2KP61086 200 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 CXorf66Q5JRM2 361 aaPredicted RBP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 NANPQ8TBE9 248 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 SSC4DQ8WTU2 575 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM230Q96A57 120 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 PHYHIPLQ96FC7 376 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 OR5AC2Q9NZP5 309 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 ADAMTS20P59510 1910 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 IGHV3-72A0A0B4J1Y9 119 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 A0A1W2PN81 502 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 MMP9P14780 707 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 CHRNA7P36544 502 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 EWSR1Q01844 656 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS4A-201ENST00000254950 RPL39P5Q59GN2 51 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 ZNF788Q6ZQV5 615 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 PNKDQ8N490 385 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 COQ2Q96H96 371 aa9.67□□□□□ -0.86
VPS4A-201ENST00000254950 RPS10-NUDT3A0A1W2PQS6 291 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 MARCH11A6NNE9 402 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 CCKARP32238 428 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 MMDQ15546 238 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 EFNB3Q15768 340 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 PERPQ96FX8 193 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 HILPDAQ9Y5L2 63 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 TNRC6AQ8NDV7 1962 aaKnown RBP9.66□□□□□ -0.86
VPS4A-201ENST00000254950 DEDDO75618 318 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 LMO1P25800 156 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 SULT1A1P50225 295 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 ACOT6Q3I5F7 207 aaPredicted RBP9.66□□□□□ -0.86
VPS4A-201ENST00000254950 MORN2Q502X0 79 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 Q8NFD4 153 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 TMEM147Q9BVK8 224 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 FAM157AC9JC47 383 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 FAM90A26D6RGX4 464 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 J3QR06 171 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 CD8AP01732 235 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 GRNP28799 593 aaKnown RBP9.66□□□□□ -0.86
VPS4A-201ENST00000254950 RPL19P84098 196 aaKnown RBP9.66□□□□□ -0.86
VPS4A-201ENST00000254950 Q8TCH9 128 aa9.66□□□□□ -0.86
VPS4A-201ENST00000254950 ZFP92A6NM28 416 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 DYNLT3P51808 116 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 ADORA2A-AS1P86434 159 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 C2orf68Q2NKX9 166 aa9.65□□□□□ -0.86
VPS4A-201ENST00000254950 Q5BKY6 102 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms