RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 RUNX1Q01196 453 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 MAP1LC3CQ9BXW4 147 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 MARCH11A6NNE9 402 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 TAF15Q92804 592 aaKnown RBP eCLIP16.22■□□□□ 0.19
PTPRE-201ENST00000254667 ISOC2Q96AB3 205 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 RALGAPA2Q2PPJ7 1873 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 ZIC3O60481 467 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 FOXH1O75593 365 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 MELTFP08582 738 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 PF4V1P10720 104 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 MFAP4P55083 255 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 LYRM7Q5U5X0 104 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 BPIFA4PQ86YQ2 179 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 ATP5J2P56134 94 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 EBLN2Q6P2I7 272 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 LINC00114Q6XXX2 140 aa16.22■□□□□ 0.19
PTPRE-201ENST00000254667 TNFSF10P50591 281 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 TMEM78Q5T7P6 136 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 WFDC3Q8IUB2 231 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 FAM216AQ8WUB2 273 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 SLC25A33Q9BSK2 321 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 APCSP02743 223 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 UNC119Q13432 240 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 CXorf66Q5JRM2 361 aaPredicted RBP16.21■□□□□ 0.19
PTPRE-201ENST00000254667 hCG_38984A0A1B0GV85 526 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 J3KRW8 73 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 SLC25A17O43808 307 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 TNFRSF9Q07011 255 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 SMAGPQ0VAQ4 97 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 LAIR2Q6ISS4 152 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 QTRT1Q9BXR0 403 aaKnown RBP16.21■□□□□ 0.19
PTPRE-201ENST00000254667 C5orf66Q9H5L9 145 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 PTPRFP10586 1907 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 LOC102723996A0A087X1L8 192 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 A8MWL6 223 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 HKR1P10072 659 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 GLIPR1P48060 266 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 NPBWR2P48146 333 aa16.21■□□□□ 0.19
PTPRE-201ENST00000254667 SNURFLB1AK76 121 aa16.21■□□□□ 0.18
PTPRE-201ENST00000254667 CSRP1P21291 193 aaKnown RBP16.21■□□□□ 0.18
PTPRE-201ENST00000254667 ZNF880Q6PDB4 577 aa16.21■□□□□ 0.18
PTPRE-201ENST00000254667 PRNTQ86SH4 94 aa16.21■□□□□ 0.18
PTPRE-201ENST00000254667 LRRC75AQ8NAA5 344 aa16.21■□□□□ 0.18
PTPRE-201ENST00000254667 FAM57AQ8TBR7 257 aa16.21■□□□□ 0.18
PTPRE-201ENST00000254667 AICDAQ9GZX7 198 aa16.21■□□□□ 0.18
PTPRE-201ENST00000254667 RPS11P62280 158 aaKnown RBP eCLIP16.2■□□□□ 0.18
PTPRE-201ENST00000254667 HCP5Q6MZN7 132 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 Q6ZN92 141 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 CBLN2Q8IUK8 224 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 OR10J6PQ8NGY7 276 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 WNT9BO14905 357 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 HSPB1P04792 205 aaKnown RBP16.2■□□□□ 0.18
PTPRE-201ENST00000254667 SPANXN1Q5VSR9 72 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 WDFY1Q8IWB7 410 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 MEGF10Q96KG7 1140 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 SOSTQ9BQB4 213 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 RSG1Q9BU20 258 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 HSPB8Q9UJY1 196 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 C17orf51A8MQB3 221 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 OR2D3Q8NGH3 330 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 RAB24Q969Q5 203 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 C19orf24Q9BVV8 132 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 FUT9Q9Y231 359 aa16.2■□□□□ 0.18
PTPRE-201ENST00000254667 KBTBD11O94819 623 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 MGPP08493 103 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 CELA3AP09093 270 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 IER3P46695 156 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 RSPO4Q2I0M5 234 aaPredicted RBP16.19■□□□□ 0.18
PTPRE-201ENST00000254667 TUSC1Q2TAM9 212 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 GTF2H5Q6ZYL4 71 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 RAMP1O60894 148 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 HTN1P15515 57 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 RND2P52198 227 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 SMIM8Q96KF7 97 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 IFT22Q9H7X7 185 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 M0R143 59 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 ARF6P62330 175 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 RBM14Q96PK6 669 aaKnown RBP16.19■□□□□ 0.18
PTPRE-201ENST00000254667 NRIP2Q9BQI9 281 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 SPTA1P02549 2419 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 TMEM105Q8N8V8 129 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 OR5AU1Q8NGC0 362 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 TM2D1Q9BX74 207 aa16.19■□□□□ 0.18
PTPRE-201ENST00000254667 RAB9AP51151 201 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 FAM3BP58499 235 aaPredicted RBP16.18■□□□□ 0.18
PTPRE-201ENST00000254667 MEF2BQ02080 365 aaPredicted RBP16.18■□□□□ 0.18
PTPRE-201ENST00000254667 C16orf92Q96LL3 132 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 MRPL37Q9BZE1 423 aaKnown RBP16.18■□□□□ 0.18
PTPRE-201ENST00000254667 IL36RNQ9UBH0 155 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 ZNF250P15622 560 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 CLDN18P56856 261 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 ZNF146Q15072 292 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 ASPHD2Q6ICH7 369 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 AHCTF1Q8WYP5 2266 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 SS18L1O75177 396 aaPredicted RBP16.18■□□□□ 0.18
PTPRE-201ENST00000254667 UMODP07911 640 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 CECR9P0C854 216 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 TMEM187Q14656 261 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 VWA1Q6PCB0 445 aa16.18■□□□□ 0.18
PTPRE-201ENST00000254667 C1QTNF5Q9BXJ0 243 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms