RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 CTDSP1Q9GZU7 261 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 UFSP2Q9NUQ7 469 aa13.74□□□□□ -0.21
HOXD3-201ENST00000249440 TGOLN2O43493 480 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BKO60814 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 PTBP3O95758 552 aaKnown RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 TRGC2P03986 189 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BJP06899 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BOP23527 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 CD82P27701 267 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BBP33778 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 KIR2DL2P43627 348 aaPredicted RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 CCL11P51671 97 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BDP58876 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BCP62807 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 COL10A1Q03692 680 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST2H2BEQ16778 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 ZNF718Q3SXZ3 478 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 WDR25Q64LD2 544 aaPredicted RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 PIP4P1Q86T03 277 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BHQ93079 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HSD17B10Q99714 261 aaKnown RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BNQ99877 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HIST1H2BMQ99879 126 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 MIOXQ9UGB7 285 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 PMS2P5A8MQ11 134 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 ZG16O60844 167 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 RBMXL2O75526 392 aaKnown RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 GCH1P30793 250 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 SSTR5P35346 364 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 FABP6P51161 128 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 HOXA4Q00056 320 aaPredicted RBP13.73□□□□□ -0.21
HOXD3-201ENST00000249440 ACSM6Q6P461 480 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 VWA1Q6PCB0 445 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 WASF3Q9UPY6 502 aa13.73□□□□□ -0.21
HOXD3-201ENST00000249440 CTXND1A0A1B0GTU2 59 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OR5H1A6NKK0 313 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OPN1MWP04001 364 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OPN1MW2P0DN77 364 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OPN1MW3P0DN78 364 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 S100A2P29034 98 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 PSMB3P49720 205 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 HNF4GQ14541 408 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 TRIP6Q15654 476 aaKnown RBP13.72□□□□□ -0.21
HOXD3-201ENST00000249440 TRAT1Q6PIZ9 186 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 FDCSPQ8NFU4 85 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OR13A1Q8NGR1 328 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 AGMATQ9BSE5 352 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 MSL2Q9HCI7 577 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 GAR1Q9NY12 217 aaKnown RBP13.72□□□□□ -0.21
HOXD3-201ENST00000249440 NAT8Q9UHE5 227 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 CACNA1GO43497 2377 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 HEATR1Q9H583 2144 aaKnown RBP13.72□□□□□ -0.21
HOXD3-201ENST00000249440 AQP7O14520 342 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 CECR9P0C854 216 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 FGF7P21781 194 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 CD81P60033 236 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 TPRX1Q8N7U7 411 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OR10G9Q8NGN4 311 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 OR10G7Q8NGN6 311 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 ZDHHC16Q969W1 377 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 SMIM7Q9BQ49 75 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 GGACTQ9BVM4 153 aa13.72□□□□□ -0.21
HOXD3-201ENST00000249440 PRR14LQ5THK1 2151 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 LINC00473A8K010 186 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 LINC00587B1AMM8 73 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 NKX2-8O15522 239 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 SPINT2O43291 252 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 TFF1P04155 84 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 ADH4P08319 380 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 NKX6-1P78426 367 aaPredicted RBP13.71□□□□□ -0.21
HOXD3-201ENST00000249440 HTD2P86397 168 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 ZNF709Q8N972 641 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 C9orf106Q8NAJ2 232 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 SARAFQ96BY9 339 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 METRNQ9UJH8 293 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 FZR1Q9UM11 496 aa13.71□□□□□ -0.21
HOXD3-201ENST00000249440 TRBV24-1A0A075B6N3 115 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 IGHV3-43A0A0B4J1X8 118 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 MARCH11A6NNE9 402 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 SEC14L6B5MCN3 397 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 TMEM250H0YL14 139 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 IGHV3-43DP0DP04 118 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 MZT1Q08AG7 82 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 TMEM241Q24JQ0 296 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 NCR3LG1Q68D85 454 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 CYP2G1PQ6ZSU1 146 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 C1orf174Q8IYL3 243 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 RFESDQ8TAC1 157 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 NPCDR1Q9BY65 106 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 ACTR3CQ9C0K3 210 aaPredicted RBP13.7□□□□□ -0.22
HOXD3-201ENST00000249440 SLC25A22Q9H936 323 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 PSG11Q9UQ72 335 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 BOD1L1Q8NFC6 3051 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 GNB2P62879 340 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 PAX5Q02548 391 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 NHLH1Q02575 133 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 VWC2Q2TAL6 325 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 Q3ZCU0 254 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 FFAR4Q5NUL3 377 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms