RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 PRAMEF5Q5TYX0 476 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 TMEM14EPQ6UXP3 125 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 KDF1Q8NAX2 398 aaPredicted RBP6.86□□□□□ -1.31
VAMP3-201ENST00000054666 PINX1Q96BK5 328 aaKnown RBP6.86□□□□□ -1.31
VAMP3-201ENST00000054666 SDSLQ96GA7 329 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 PLPPR2Q96GM1 343 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 RSG1Q9BU20 258 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 ABHD14AQ9BUJ0 271 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 FAM234AQ9H0X4 552 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 NGBQ9NPG2 151 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 RFNGQ9Y644 331 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 RP1L1Q8IWN7 2480 aaPredicted RBP6.86□□□□□ -1.31
VAMP3-201ENST00000054666 ITGB1BP1O14713 200 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 RBFOX2O43251 390 aaKnown RBP eCLIP6.86□□□□□ -1.31
VAMP3-201ENST00000054666 SERF2P84101 59 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 ARL16Q0P5N6 197 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 ATP6V1FQ16864 119 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 TMEM30BQ3MIR4 351 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 AWAT1Q58HT5 328 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 HAPLN4Q86UW8 402 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 DEFB108BQ8NET1 73 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 OR10P1Q8NGE3 313 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 S1PR3Q99500 378 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 TMEM147Q9BVK8 224 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 WDR61Q9GZS3 305 aaKnown RBP6.86□□□□□ -1.31
VAMP3-201ENST00000054666 IFI27L2Q9H2X8 130 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 SMCO4Q9NRQ5 59 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 GFOD1Q9NXC2 390 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 CLN8Q9UBY8 286 aa6.86□□□□□ -1.31
VAMP3-201ENST00000054666 DIDO1Q9BTC0 2240 aaKnown RBP6.86□□□□□ -1.31
VAMP3-201ENST00000054666 KBTBD11-OT1A0A1B0GTJ5 212 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 FAM90A9PA6NNJ1 464 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 PPIHO43447 177 aaKnown RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 ZG16O60844 167 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 IFNA17P01571 189 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 OR4A8P0C604 315 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 OR13C7P0DN81 318 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SELLP14151 372 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 LOXL3P58215 753 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 FLI1Q01543 452 aaPredicted RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 BSPH1Q075Z2 132 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SOHLH1Q5JUK2 328 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 NCR3LG1Q68D85 454 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SPSB3Q6PJ21 355 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 C22orf34Q6ZV56 151 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 C1orf87Q8N0U7 546 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 OR4A16Q8NH70 328 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 OR4S2Q8NH73 311 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 RND1Q92730 232 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SNRNP40Q96DI7 357 aaKnown RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 GAFA1Q96PS6 74 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SCRT1Q9BWW7 348 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 EGLN1Q9GZT9 426 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 RPS10P5Q9NQ39 176 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 MLXQ9UH92 298 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 ZNF835Q9Y2P0 537 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 TIMM9Q9Y5J7 89 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 PLCE1Q9P212 2302 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 ZNF729A6NN14 1252 aaPredicted RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 C17orf100A8MU93 164 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 GYPAP02724 150 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SNRNP70P08621 437 aaKnown RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 NFYBP25208 207 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 TMPRSS3P57727 454 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 BRWD1-AS2P59051 145 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 RPP30P78346 268 aaKnown RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 RHEBQ15382 184 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 HAGHQ16775 308 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 HFEQ30201 348 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 RPL39P5Q59GN2 51 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 TMEM41BQ5BJD5 291 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 ZNF787Q6DD87 383 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 TAF15Q92804 592 aaKnown RBP eCLIP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 ZDHHC16Q969W1 377 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 OR4C12Q96R67 309 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 HIPK2Q9H2X6 1198 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 SAP30LQ9HAJ7 183 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 JKAMPQ9P055 326 aa6.85□□□□□ -1.31
VAMP3-201ENST00000054666 MAP1BP46821 2468 aaKnown RBP6.85□□□□□ -1.31
VAMP3-201ENST00000054666 TANC2Q9HCD6 1990 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 TRAV1-1A0A0B4J248 108 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 TRAV38-1A0A0B4J264 116 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 IFNA1P01562 189 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 IGHV3-7P01780 117 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 HSPB1P04792 205 aaKnown RBP6.84□□□□□ -1.31
VAMP3-201ENST00000054666 CD55P08174 381 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 NQO2P16083 231 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 THBS3P49746 956 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 ELLP55199 621 aaPredicted RBP6.84□□□□□ -1.31
VAMP3-201ENST00000054666 CASP6P55212 293 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 OR2B8PP59922 312 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 CCL8P80075 99 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 TLE1Q04724 770 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 ADIPOQQ15848 244 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 C17orf58Q2M2W7 97 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 PRR30Q53SZ7 412 aaPredicted RBP6.84□□□□□ -1.31
VAMP3-201ENST00000054666 ZNF506Q5JVG8 444 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 TEX36Q5VZQ5 186 aa6.84□□□□□ -1.31
VAMP3-201ENST00000054666 ADAM5Q6NVV9 412 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms