RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 LAMP3Q9UQV4 416 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 PAGE4O60829 102 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 AMBPP02760 352 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 C1QTNF9P0C862 333 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 FABP6P51161 128 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 MOB3BQ86TA1 216 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 TMEM170AQ8WVE7 144 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 POM121Q96HA1 1249 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 HIST1H2AAQ96QV6 131 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 TMEM9BQ9NQ34 198 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 DSCAML1Q8TD84 2053 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 RRHO14718 337 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 PFN1P07737 140 aaKnown RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 ZNF134P52741 427 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 EDDM3AQ14507 147 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 ZNF766Q5HY98 468 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 NCR3LG1Q68D85 454 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 SLC35E3Q7Z769 313 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 SNRNP40Q96DI7 357 aaKnown RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 BOKQ9UMX3 212 aaPredicted RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 RBFOX2O43251 390 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP28-201ENST00000003302 OR9G9P0C7N8 305 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 KDF1Q8NAX2 398 aaPredicted RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 C1orf159Q96HA4 380 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 PACRGQ96M98 296 aaPredicted RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 A0A087WWC5 75 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 HBZP02008 142 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 SRPXP78539 464 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 RAB24Q969Q5 203 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 IGHV3OR15-7A0A075B7D8 119 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 PPP1R2P9O14990 202 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 LAMTOR5O43504 91 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 IFNA5P01569 189 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 NDUFB7P17568 137 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 TMEM14EPQ6UXP3 125 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 C22orf34Q6ZV56 151 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 C1orf210Q8IVY1 113 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 QTRT1Q9BXR0 403 aaKnown RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 LINC00470Q9BZP3 86 aa8.92□□□□□ -0.98
USP28-201ENST00000003302 MBNL3Q9NUK0 354 aaKnown RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 CISD1Q9NZ45 108 aaKnown RBP8.92□□□□□ -0.98
USP28-201ENST00000003302 ZNF729A6NN14 1252 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 GZMBP10144 247 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 HIST1H1BP16401 226 aaKnown RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 GABRA2P47869 451 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 MEF2BQ02080 365 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 EIF4EBP1Q13541 118 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 TDRG1Q3Y452 100 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 RPL39P5Q59GN2 51 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 TMEM256Q8N2U0 113 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 RPRMLQ8N4K4 120 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 OR4F5Q8NH21 305 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 OR4F4Q96R69 305 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 P0C879 139 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 PRB4P10163 310 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 Q3ZCU0 254 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 ZNF600Q6ZNG1 722 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 ZNF573Q86YE8 665 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 KLF14Q8TD94 323 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 MBD3L1Q8WWY6 194 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 WASF3Q9UPY6 502 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 DMRT1Q9Y5R6 373 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A10PA6NDY2 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A18PA6NE21 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A16PA6NEW6 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A20PA6NIJ5 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A8PA6NJQ4 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A7PA6NKC0 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A22PA8MWA6 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A12PA8MX19 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A5PA8MXJ8 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A23PA8MXZ1 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 J3QT63 122 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 CYB5R3P00387 301 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A15PP0C7V4 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A13PP0C7W8 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A14PP0C7W9 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FAM90A24PP0C7X0 464 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 RND2P52198 227 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 PPP1CBP62140 327 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 NKX6-1P78426 367 aaPredicted RBP8.91□□□□□ -0.98
USP28-201ENST00000003302 ARG2P78540 354 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 MCEMP1Q8IX19 187 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 ZNF664Q8N3J9 261 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 SCGB1C1Q8TD33 95 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 S100PBPQ96BU1 408 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 MISP3Q96FF7 219 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 SDSLQ96GA7 329 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 PSG11Q9UQ72 335 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 FUT9Q9Y231 359 aa8.91□□□□□ -0.98
USP28-201ENST00000003302 SLC31A2O15432 143 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 HAND1O96004 215 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 OR4A8P0C604 315 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 EDDM3BP56851 147 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 RAB40CQ96S21 281 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 AGMATQ9BSE5 352 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 F2Z2F3 143 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 SYNGR4O95473 234 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 OPN1MWP04001 364 aa8.9□□□□□ -0.98
USP28-201ENST00000003302 SP1P08047 785 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms