RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CEACAM21Q3KPI0 293 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FAM74A4Q5TZK3 123 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 COLCA1Q6ZS62 124 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OR2D3Q8NGH3 330 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 RBFOX2O43251 390 aaKnown RBP eCLIP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 PTBP3O95758 552 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OTPQ5XKR4 325 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 TGIF2Q9GZN2 237 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 Q9N2K0 584 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OPN4Q9UHM6 478 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SIGLEC7Q9Y286 467 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FREM3P0C091 2139 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 C11orf94C9JXX5 98 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SRSF10O75494 262 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 IGKV3-20P01619 116 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FCGR3AP08637 254 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FAM74A3Q4VXF1 159 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 PNKDQ8N490 385 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 TCTEX1D1Q8N7M0 179 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OR1K1Q8NGR3 316 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 QTRT1Q9BXR0 403 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 NXT2Q9NPJ8 142 aaKnown RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM140Q9NV12 185 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SIRT4Q9Y6E7 314 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 FUCA1P04066 466 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 PSG6Q00889 435 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SMUG1Q53HV7 270 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF770Q6IQ21 691 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-217ENST00000637988 DLEU7Q6UYE1 221 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 SPACA3Q8IXA5 215 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 LINC01555Q8NAE3 123 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 OR8A1Q8NGG7 326 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 UCN2Q96RP3 112 aa5.32□□□□□ -1.56
SCN1A-217ENST00000637988 RBMY1BA6NDE4 496 aaKnown RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 RBMY1EA6NEQ0 496 aaKnown RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 RBMY1DP0C7P1 496 aaKnown RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 RBMY1A1P0DJD3 496 aaKnown RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 RBMY1CP0DJD4 496 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 CD99P14209 185 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 FXYD3Q14802 87 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ACSF3Q4G176 576 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 NR2C2APQ86WQ0 139 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF501Q96CX3 271 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 FGF20Q9NP95 211 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 CDC42EP3Q9UKI2 254 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 PHF3Q92576 2039 aaKnown RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 SCN10AQ9Y5Y9 1956 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 LOC389332A0A1B0GUA5 103 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 KLK8O60259 260 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 CSN3P07498 182 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 GABRB1P18505 474 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 RTN4RQ9BZR6 473 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 NAT8Q9UHE5 227 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 IGLV3-16A0A075B6K0 115 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 LOC101059948A0A1B0GTJ6 334 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 TBX19O60806 448 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 B2MP61769 119 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 PLPPR5Q32ZL2 321 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ERASQ7Z444 233 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 TEX37Q96LM6 180 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM191AQ9H0A3 160 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 SDF2L1Q9HCN8 221 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 IL20Q9NYY1 176 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 DUXBA0A1W2PPF3 345 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 FAM157CP0CG43 387 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 PAX1P15863 534 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ANOS1P23352 680 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 CKS2P33552 79 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 HIST1H1AQ02539 215 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 CLEC9AQ6UXN8 241 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF703Q9H7S9 590 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 PARD6AQ9NPB6 346 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ZFP30Q9Y2G7 519 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 M0R143 59 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 DGCR2P98153 550 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 MIDNQ504T8 468 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 OR2C3Q8N628 320 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 GP6Q9HCN6 339 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 A6NDN8 102 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 IL6RP08887 468 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ZP3P21754 424 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 TIAL1Q01085 375 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 HSPB7Q9UBY9 170 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF107Q9UII5 783 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 A0A0A6YYJ9 748 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 IGHV3-72A0A0B4J1Y9 119 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 IGHV4-34P06331 123 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 MVDP53602 400 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 TGIF1Q15583 401 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 C1QTNF12Q5T7M4 302 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM167AQ8TBQ9 72 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 MYEOVQ96EZ4 313 aa5.31□□□□□ -1.56
SCN1A-217ENST00000637988 SEPSECSQ9HD40 501 aaKnown RBP5.31□□□□□ -1.56
SCN1A-217ENST00000637988 RPL36A-HNRNPH2H7BZ11 118 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 BCL2L11O43521 198 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 CD1AP06126 327 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 BAK1Q16611 211 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 BAP18Q8IXM2 172 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 ANGPTL4Q9BY76 406 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 NPVFQ9HCQ7 196 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms