RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 KCNIP2Q9NS61 270 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 SLC2A6Q9UGQ3 507 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CYSLTR1Q9Y271 337 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 WASHC3Q9Y3C0 194 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 SOX21Q9Y651 276 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 DAPK1P53355 1430 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 SPATA31E1Q6ZUB1 1445 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 NSD3Q9BZ95 1437 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 PZPP20742 1482 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ROBO3Q96MS0 1386 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 TP53BP1Q12888 1972 aaPredicted RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 hCG_1818297A0A087WSY0 165 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 IGHV1OR21-1A0A087WYE8 117 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 IGLV1-36A0A0B4J1U3 117 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 A0A0G2JMM0 328 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 A0A1W2PPB8 328 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 RBMY1BA6NDE4 496 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 RBMY1EA6NEQ0 496 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 FAM183AA6NL82 134 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 OR4C45A6NMZ5 311 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 A8MT66 165 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 KIR3DP1A8MWS1 328 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 H7BYZ3 331 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 NPFFO15130 113 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 MPPED1O15442 326 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 LMX1BO60663 402 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 PGLYRP1O75594 196 aaPredicted RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 DUS4LO95620 317 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 HLA-DRB1P01911 266 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 PMP2P02689 132 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 GYPCP04921 128 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 RBMY1DP0C7P1 496 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 IGLC6P0CF74 106 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 RBMY1A1P0DJD3 496 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 BCL2P10415 239 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 RPS4Y1P22090 263 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 IMPA1P29218 277 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 ATP5G3P48201 142 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 AKR1C2P52895 323 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 UBE2NP61088 152 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 RPS27AP62979 156 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 BTG2P78543 158 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 HOXC5Q00444 222 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 NAIPQ13075 1403 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 KIAA0040Q15053 153 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 PRR30Q53SZ7 412 aaPredicted RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 SLC25A30Q5SVS4 291 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 CNIH2Q6PI25 160 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 Q6ZN92 141 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 ZNF720Q7Z2F6 126 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 DCAF4L2Q8NA75 395 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 PRSS33Q8NF86 280 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 OR5AP2Q8NGF4 316 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 OR1L3Q8NH93 324 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 PPTC7Q8NI37 304 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 ZNF420Q8TAQ5 688 aaPredicted RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 RXFP4Q8TDU9 374 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 CCL17Q92583 94 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 ZNF689Q96CS4 500 aaPredicted RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 C18orf12Q96KH6 178 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 SPACA5Q96QH8 159 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 NAA38Q9BRA0 125 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 DERL1Q9BUN8 251 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 C19orf24Q9BVV8 132 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 SFXN3Q9BWM7 321 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 C1QTNF6Q9BXI9 259 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 ZNF436Q9C0F3 470 aaPredicted RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 SLC25A31Q9H0C2 315 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 MED28Q9H204 178 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 ZNF696Q9H7X3 374 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 EDA2RQ9HAV5 297 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 PDFQ9HBH1 243 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 KIAA1551Q9HCM1 1747 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 MARCH5Q9NX47 278 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 CALYQ9NYX4 217 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 RBM12B-AS1Q9P1G2 102 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 LAMTOR3Q9UHA4 124 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 VSIG4Q9Y279 399 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 INSIG2Q9Y5U4 225 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 KCNE3Q9Y6H6 103 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 GRIN2AQ12879 1464 aa2.38□□□□□ -2.03
VIM-210ENST00000637053 TCOF1Q13428 1488 aaKnown RBP2.38□□□□□ -2.03
VIM-210ENST00000637053 PHLPP1O60346 1717 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 BAZ1AQ9NRL2 1556 aaPredicted RBP2.37□□□□□ -2.03
VIM-210ENST00000637053 HECW2Q9P2P5 1572 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 ZNFX1Q9P2E3 1918 aaKnown RBP2.37□□□□□ -2.03
VIM-210ENST00000637053 AKAP11Q9UKA4 1901 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 MYH2Q9UKX2 1941 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 MYH15Q9Y2K3 1946 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 DISP2A7MBM2 1401 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 PTPRKQ15262 1439 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 PRG4Q92954 1404 aaPredicted RBP2.37□□□□□ -2.03
VIM-210ENST00000637053 TRAV8-6A0A0B4J262 113 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 IGKV1D-13A0A0B4J2D9 117 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 GGT3PA6NGU5 568 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 LINC00473A8K010 186 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 GGTLC3B5MD39 225 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 H3BP45 60 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 J3QQQ9 107 aa2.37□□□□□ -2.03
VIM-210ENST00000637053 XKRYO14609 159 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms