RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 RPS4XP62701 263 aaKnown RBP4.84□□□□□ -1.64
SCN1A-209ENST00000635750 PAGE4O60829 102 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 SPRED3Q2MJR0 410 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 VN1R17PQ8TDU5 208 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 BEX4Q9NWD9 120 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-209ENST00000635750 WBP1LQ9NX94 342 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 KIF13BQ9NQT8 1826 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 KIF26BQ2KJY2 2108 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TRAV20A0A0B4J274 112 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 RPL36A-HNRNPH2H7BZ11 118 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TRGV3P03979 118 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 FUCA1P04066 466 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 CCL4P13236 92 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 NPFFR1Q9GZQ6 430 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 ELOVL5Q9NYP7 299 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 GTF3C1Q12789 2109 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 HKR1P10072 659 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 HOXA6P31267 233 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 VDAC2P45880 294 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-209ENST00000635750 HMGA2P52926 109 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 MESTQ5EB52 335 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM92Q6UXU6 159 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 FUT9Q9Y231 359 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 PAM16Q9Y3D7 125 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 MGST3O14880 152 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 ISG15P05161 165 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 MMP9P14780 707 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 HIST1H1AQ02539 215 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-209ENST00000635750 CD69Q07108 199 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 GAB4Q2WGN9 574 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 FAM209BQ5JX69 171 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 DDA1Q9BW61 102 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 CLEC7AQ9BXN2 247 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 OPN3Q9H1Y3 402 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-209ENST00000635750 PRO1933Q9H354 126 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TOMM7Q9P0U1 55 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 LOC102723996A0A087X1L8 192 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 A0A1W2PRX2 142 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 B9A039 149 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 PSG2P11465 335 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 ASIPP42127 132 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 HCP5Q6MZN7 132 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 C12orf54Q6X4T0 127 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 FAM214BQ7L5A3 538 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 CRYGNQ8WXF5 182 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 MARVELD3Q96A59 401 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 SFXN3Q9BWM7 321 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 IDI2-AS1Q9NZ38 188 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 KCNE5Q9UJ90 142 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 AKAP6Q13023 2319 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TRBV5-4A0A0C4DH59 114 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 LINC00869P0C866 280 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM30BQ3MIR4 351 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 DEFB121Q5J5C9 76 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 IBA57Q5T440 356 aaKnown RBP4.83□□□□□ -1.64
SCN1A-209ENST00000635750 LEMD1Q68G75 181 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 C16orf47Q6ZP98 133 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-209ENST00000635750 OVCH2Q7RTZ1 564 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 A0A087X0M5 115 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 A0A1B0GX30 115 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 C9JCJ5 164 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 NPIPB11E5RHQ5 1161 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM50BP56557 158 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 CD81P60033 236 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 ARF6P62330 175 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 OR10AG1Q8NH19 301 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 PGLYRP4Q96LB8 373 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 SLC25A37Q9NYZ2 338 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 PXMP4Q9Y6I8 212 aa4.83□□□□□ -1.64
SCN1A-209ENST00000635750 IGHV3-72A0A0B4J1Y9 119 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 MED19A0JLT2 244 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 MPZL1O95297 269 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 NPBWR2P48146 333 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 ADAD2Q8NCV1 583 aaKnown RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 WNT2BQ93097 391 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 LINC00470Q9BZP3 86 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 KLK15Q9H2R5 256 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM74BQ9NUR3 256 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 PITX3O75364 302 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 ZFPL1O95159 310 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 CDS2O95674 445 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 CCL3P10147 92 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 ZNF25P17030 456 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 MEF2CQ06413 473 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 PIGYQ3MUY2 71 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 TSPO2Q5TGU0 170 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 MBNL2Q5VZF2 373 aaKnown RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 OR9G4Q8NGQ1 327 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 QTRT1Q9BXR0 403 aaKnown RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 ZNF430Q9H8G1 570 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 SDF2L1Q9HCN8 221 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 CCL28Q9NRJ3 127 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 CHD3Q12873 2000 aaKnown RBP4.82□□□□□ -1.64
SCN1A-209ENST00000635750 IGHV1-69-2A0A0G2JMI3 117 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 KLK8O60259 260 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 SEC11BP0C7V7 166 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 SSTR5P35346 364 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 TMEM170BQ5T4T1 132 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 ZNF880Q6PDB4 577 aa4.82□□□□□ -1.64
SCN1A-209ENST00000635750 CLEC18BQ6UXF7 455 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms