RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DOCK6Q96HP0 2047 aa12.06□□□□□ -0.48
CPSF1-212ENST00000616140 RECKO95980 971 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 MFAP2P55001 183 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 OR2V2Q96R30 315 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 SH3BGRL3Q9H299 93 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 AKIRIN1Q9H9L7 192 aaPredicted RBP12.05□□□□□ -0.48
CPSF1-212ENST00000616140 IL19Q9UHD0 177 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 MSGN1A6NI15 193 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 NKX2-8O15522 239 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 CYB5R3P00387 301 aaPredicted RBP12.05□□□□□ -0.48
CPSF1-212ENST00000616140 COX6A1P12074 109 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 RND3P61587 244 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 C2orf68Q2NKX9 166 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 STXBP6Q8NFX7 210 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 FAM222BQ8WU58 562 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 MARS2Q96GW9 593 aaKnown RBP12.05□□□□□ -0.48
CPSF1-212ENST00000616140 BET1LQ9NYM9 111 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 NPTNQ9Y639 398 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 F5H697 171 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 CD8AP01732 235 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 P2RY6Q15077 328 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 SOSTQ9BQB4 213 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 TMEM191AQ9H0A3 160 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 ASCL3Q9NQ33 180 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 OR51B2Q9Y5P1 312 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 ADRA2AP08913 450 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 ACP1P24666 158 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 RTP5Q14D33 572 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 MMDQ15546 238 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 FAM216AQ8WUB2 273 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 MARVELD3Q96A59 401 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 SLC25A10Q9UBX3 287 aaPredicted RBP12.05□□□□□ -0.48
CPSF1-212ENST00000616140 CBY1Q9Y3M2 126 aa12.05□□□□□ -0.48
CPSF1-212ENST00000616140 ABCA4P78363 2273 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 OR10J1P30954 320 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 FAM3BP58499 235 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-212ENST00000616140 IGSF23A1L1A6 192 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 PRSS1P07477 247 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 ACAA1P09110 424 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-212ENST00000616140 POC1AQ8NBT0 407 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 VN1R17PQ8TDU5 208 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 PERPQ96FX8 193 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 NUDT16L1Q9BRJ7 211 aaKnown RBP12.04□□□□□ -0.48
CPSF1-212ENST00000616140 PPIAL4EA0A075B759 164 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 PPIAL4DF5H284 164 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 K7N7A8 449 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 PPIAL4FP0DN26 164 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 RAB24Q969Q5 203 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 MEGF10Q96KG7 1140 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 RARRES2Q99969 163 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 PPIAL4AQ9Y536 164 aa12.04□□□□□ -0.48
CPSF1-212ENST00000616140 IGHMP01871 453 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 ITLN1Q8WWA0 313 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 PRDM14Q9GZV8 571 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 OPN3Q9H1Y3 402 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-212ENST00000616140 COA4Q9NYJ1 87 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 IL17BQ9UHF5 180 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 GREB1Q4ZG55 1949 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 IGKV3D-11A0A0A0MRZ8 115 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 HIST1H1EP10412 219 aaKnown RBP12.03□□□□□ -0.48
CPSF1-212ENST00000616140 LGALS7P47929 136 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 SELENOHQ8IZQ5 122 aaKnown RBP12.03□□□□□ -0.48
CPSF1-212ENST00000616140 NFAM1Q8NET5 270 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-212ENST00000616140 OR8B3Q8NGG8 313 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 OR8B2Q96RD0 313 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 PKIBQ9C010 78 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 UFC1Q9Y3C8 167 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 DOCK7Q96N67 2140 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 ODAMA1E959 279 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 ZIC3O60481 467 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 SMPD2O60906 423 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 MPDU1O75352 247 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 BRS3P32247 399 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 C10orf128Q5T292 105 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 ZNF818PQ6ZRF7 136 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 RBKSQ9H477 322 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 GSX1Q9H4S2 264 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-212ENST00000616140 PILRBQ9UKJ0 227 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 IGKV3-7A0A075B6H7 116 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 ZNF137PP52743 207 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 STARD6P59095 220 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 Q8WTZ3 238 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 PCGF1Q9BSM1 259 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 CHRNA10Q9GZZ6 450 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 HEXA-AS1Q9H8Q6 139 aa12.03□□□□□ -0.48
CPSF1-212ENST00000616140 MYO7BQ6PIF6 2116 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 BRCA1P38398 1863 aaKnown RBP12.02□□□□□ -0.48
CPSF1-212ENST00000616140 TMSB15BA0A087X1C1 80 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 IGHV3-72A0A0B4J1Y9 119 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 ORM1P02763 201 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 DANCRP0C864 163 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 TMEM187Q14656 261 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 MIC13Q5XKP0 118 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 WDR25Q64LD2 544 aaPredicted RBP12.02□□□□□ -0.48
CPSF1-212ENST00000616140 C1RLQ9NZP8 487 aa12.02□□□□□ -0.48
CPSF1-212ENST00000616140 CD82P27701 267 aa12.02□□□□□ -0.49
CPSF1-212ENST00000616140 LINC00114Q6XXX2 140 aa12.02□□□□□ -0.49
CPSF1-212ENST00000616140 TP53BP1Q12888 1972 aaPredicted RBP12.02□□□□□ -0.49
CPSF1-212ENST00000616140 A0A087WV48 116 aa12.02□□□□□ -0.49
CPSF1-212ENST00000616140 Q1RN00 199 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms