RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 FOXB2Q5VYV0 432 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 C11orf88Q6PI97 169 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 C16orf82Q7Z2V1 217 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 C5orf56Q8N8D9 126 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 Q8N9W7 124 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 ZNF383Q8NA42 475 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 OR4C13Q8NGP0 309 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 OR2T10Q8NGZ9 312 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 WFDC12Q8WWY7 111 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 GINS4Q9BRT9 223 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 NXF2Q9GZY0 626 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 SDHAF2Q9NX18 166 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 EXTL2Q9UBQ6 330 aa11.29□□□□□ -0.6
SHKBP1-217ENST00000598558 A0A1B0GUS0 222 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 SMIM31A0A1B0GVY4 71 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 CCDC160A6NGH7 325 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 LINC01548A6NM66 108 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 H0YJW9 148 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 TXNL1O43396 289 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 MOSP00540 346 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 IGLV2-14P01704 120 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 CTXN2P0C2S0 81 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 SOX6P35712 828 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 GPR12P47775 334 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 RNASE12Q5GAN4 147 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 FAM71F2Q6NXP2 309 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 FAM131AQ6UXB0 335 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 OR5AN1Q8NGI8 311 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 S1PR3Q99500 378 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 PRSS22Q9GZN4 317 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 OR2D2Q9H210 308 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 RSL24D1Q9UHA3 163 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 ZNF221Q9UK13 617 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 GAB2Q9UQC2 676 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 MOB4Q9Y3A3 225 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 OR2W1Q9Y3N9 320 aa11.28□□□□□ -0.6
SHKBP1-217ENST00000598558 DPPA5A6NC42 116 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 M0R1X1 148 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 RGS5O15539 181 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 NOL3O60936 208 aaKnown RBP11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 LPLP06858 475 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 AADACP22760 399 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 CBX5P45973 191 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 RFX2P48378 723 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 OR5AP2Q8NGF4 316 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 WIPF2Q8TF74 440 aaPredicted RBP11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 DCUN1D5Q9BTE7 237 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 WNT10AQ9GZT5 417 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 GHITMQ9H3K2 345 aa11.27□□□□□ -0.61
SHKBP1-217ENST00000598558 PMP2P02689 132 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 OR5H8P0DN80 308 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 FCGR2CP31995 323 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 ARPC4P59998 168 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 ACTBP60709 375 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 ZNF660Q6AZW8 331 aaPredicted RBP11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 OVCH2Q7RTZ1 564 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 OR52I2Q8NH67 350 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 OR2T6Q8NHC8 308 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 GPHA2Q96T91 129 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 CITED1Q99966 193 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 SOSTQ9BQB4 213 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 IFT46Q9NQC8 304 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 KLK11Q9UBX7 282 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 ADAM30Q9UKF2 790 aa11.26□□□□□ -0.61
SHKBP1-217ENST00000598558 NCBP2LA6PVI3 153 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 LINC00473A8K010 186 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 FGF16O43320 207 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 IGKV1-16P04430 117 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 HLA-DMAP28067 261 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 TNFSF8P32971 234 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 LUMP51884 338 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 RPL30P62888 115 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 EIF4EBP1Q13541 118 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 CDK10Q15131 360 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 C9orf152Q5JTZ5 239 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 C10orf99Q6UWK7 81 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 FAM71E2Q8N5Q1 922 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 KLHDC1Q8N7A1 406 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 MCFD2Q8NI22 146 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 C6orf62Q9GZU0 229 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 SCPEP1Q9HB40 452 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 NECAP2Q9NVZ3 263 aa11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 RBM7Q9Y580 266 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-217ENST00000598558 ZNF701M0R085 212 aaPredicted RBP11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 SULT1C2O00338 296 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 VSIG10L2P0DP72 767 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 DUTP33316 252 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 BRWD1-AS2P59051 145 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 DGCR2P98153 550 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 SHISA2Q6UWI4 295 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 DHRS11Q6UWP2 260 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 C11orf44Q8N8P7 122 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 GIMAP1Q8WWP7 306 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 DDB2Q92466 427 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 AKR1E2Q96JD6 320 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 HSPB9Q9BQS6 159 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 CCL28Q9NRJ3 127 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 LINC00527Q9UJ94 153 aa11.24□□□□□ -0.61
SHKBP1-217ENST00000598558 OR5H14A6NHG9 310 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms