RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 OR10X1Q8NGY0 326 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 OR8U1Q8NH10 309 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 OR9G1Q8NH87 305 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 TERB2Q8NHR7 220 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 SECTM1Q8WVN6 248 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 GIMAP1Q8WWP7 306 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 MOB3AQ96BX8 217 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 MSI2Q96DH6 328 aaKnown RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 WWC2-AS2Q96NR7 200 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 SCGB3A2Q96PL1 93 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 YPEL2Q96QA6 119 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 SLC25A21Q9BQT8 299 aaPredicted RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 ABHD14AQ9BUJ0 271 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 CLEC7AQ9BXN2 247 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 SLC5A7Q9GZV3 580 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 PARP12Q9H0J9 701 aaKnown RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 FXYD6Q9H0Q3 95 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 HEXA-AS1Q9H8Q6 139 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 LINC00574Q9H8X3 128 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 SLC2A8Q9NY64 477 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 COPZ2Q9P299 210 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 ZNF221Q9UK13 617 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 RNF150Q9ULK6 438 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 PSG11Q9UQ72 335 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 C14orf166Q9Y224 244 aaKnown RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 OR2W1Q9Y3N9 320 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 AUP1Q9Y679 476 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 MALRD1Q5VYJ5 2156 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 KIAA2026Q5HYC2 2103 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 DOCK11Q5JSL3 2073 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 DSCAML1Q8TD84 2053 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 YLPM1P49750 1951 aaKnown RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 CSMD1Q96PZ7 3565 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 TRAV6A0A075B6T7 132 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 A0A087X0M5 115 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 IGHV2-26A0A0B4J1V2 119 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 A0A1B0GX30 115 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 A0A1W2PRD5 423 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 A0A1W2PRF3 423 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 A0A1W2PRM7 423 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 J3QLI3 93 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 J3QR06 171 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 ARPC1BO15143 372 aaKnown RBP4.32□□□□□ -1.72
LIG3-210ENST00000588109 SLC31A2O15432 143 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 TUSC2O75896 110 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 NDUFB6O95139 128 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 TCRBP04435 133 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 ARG1P05089 322 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 PRTN3P24158 256 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 S100GP29377 79 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 SLC6A1P30531 599 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 BTCP35070 178 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 DLX1P56177 255 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 PAX8Q06710 450 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 BAMBIQ13145 260 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 KLRD1Q13241 179 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 SURF2Q15527 256 aaPredicted RBP4.32□□□□□ -1.72
LIG3-210ENST00000588109 Q3ZCU0 254 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 AADACL3Q5VUY0 350 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 ZNF660Q6AZW8 331 aaPredicted RBP4.32□□□□□ -1.72
LIG3-210ENST00000588109 LPCAT3Q6P1A2 487 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 PLET1Q6UQ28 207 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 LHFPL1Q86WI0 220 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 CMTM1Q8IZ96 169 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 SLC38A6Q8IZM9 456 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 PNKDQ8N490 385 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 C11orf42Q8N5U0 333 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 Q8N7P7 452 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 CCDC71LQ8N9Z2 235 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 OR13C8Q8NGS7 320 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 ZNF596Q8TC21 504 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 ZFAND1Q8TCF1 268 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 MARCH1Q8TCQ1 289 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 LHX4Q969G2 390 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 CREB3L1Q96BA8 519 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 ABHD14BQ96IU4 210 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 TBX15Q96SF7 602 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 SIRPDQ9H106 197 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 C20orf85Q9H1P6 137 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 OR2D2Q9H210 308 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 MMP28Q9H239 520 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 CCL28Q9NRJ3 127 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 NUDT15Q9NV35 164 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 AURKAIP1Q9NWT8 199 aaPredicted RBP4.32□□□□□ -1.72
LIG3-210ENST00000588109 PIPOXQ9P0Z9 390 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 AMMECR1Q9Y4X0 333 aaPredicted RBP4.32□□□□□ -1.72
LIG3-210ENST00000588109 NUBP2Q9Y5Y2 271 aa4.32□□□□□ -1.72
LIG3-210ENST00000588109 BAHCC1Q9P281 2608 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 CR1P17927 2039 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 PDZD2O15018 2839 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 IGHV3OR16-10A0A075B7F0 116 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 SAA2-SAA4A0A096LPE2 208 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 TRAV40A0A0B4J280 105 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 IGKV1D-13A0A0B4J2D9 117 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 LEUTXA8MZ59 168 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 RNASEK-C17orf49H0YIS7 233 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 GPR31O00270 319 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 ITGB1BP1O14713 200 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 RAB29O14966 203 aa4.31□□□□□ -1.72
LIG3-210ENST00000588109 TNFSF12O43508 249 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms