RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TMED6Q8WW62 240 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 CCL17Q92583 94 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 C5orf30Q96GV9 206 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 CXorf58Q96LI9 332 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 ARV1Q9H2C2 271 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 GAL3ST2Q9H3Q3 398 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 IDI2-AS1Q9NZ38 188 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 SLC25A10Q9UBX3 287 aaPredicted RBP11.75□□□□□ -0.53
LIG3-205ENST00000585941 CACNG5Q9UF02 275 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 MFSD2BA6NFX1 497 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 TOR1AO14656 332 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 CHST1O43916 411 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 CLDN14O95500 239 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 GRNP28799 593 aaKnown RBP11.75□□□□□ -0.53
LIG3-205ENST00000585941 KIR2DS2P43631 304 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 CAV2P51636 162 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 TAS2R30P59541 319 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
LIG3-205ENST00000585941 TGIF2LYQ8IUE0 185 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 SAT2Q96F10 170 aaPredicted RBP11.75□□□□□ -0.53
LIG3-205ENST00000585941 DCAF16Q9NXF7 216 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 KAAG1Q9UBP8 84 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 WSB1Q9Y6I7 421 aa11.75□□□□□ -0.53
LIG3-205ENST00000585941 PKDREJQ9NTG1 2253 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 ZZEF1O43149 2961 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 NUDT19A8MXV4 375 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 RBFOX2O43251 390 aaKnown RBP eCLIP11.74□□□□□ -0.53
LIG3-205ENST00000585941 NDUFB3O43676 98 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 MED6O75586 246 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 NDUFB7P17568 137 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 AGAP20933 346 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 PPOXP50336 477 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 TFF3Q07654 80 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 ZNF266Q14584 549 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 HFEQ30201 348 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 LRRC10Q5BKY1 277 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 FAM53AQ6NSI3 398 aaPredicted RBP11.74□□□□□ -0.53
LIG3-205ENST00000585941 DUX4L9Q6RFH8 374 aaPredicted RBP11.74□□□□□ -0.53
LIG3-205ENST00000585941 TMEM252Q8N6L7 170 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 ABHD14AQ9BUJ0 271 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 REG4Q9BYZ8 158 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 MAGT1Q9H0U3 335 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 PRELID3BQ9Y3B1 194 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 HCFC1P51610 2035 aa11.74□□□□□ -0.53
LIG3-205ENST00000585941 NBASA2RRP1 2371 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 MEX3AA1L020 520 aaKnown RBP11.73□□□□□ -0.53
LIG3-205ENST00000585941 KIAA1324LA8MWY0 1029 aaPredicted RBP11.73□□□□□ -0.53
LIG3-205ENST00000585941 I3L521 148 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 TNFRSF13BO14836 293 aaPredicted RBP11.73□□□□□ -0.53
LIG3-205ENST00000585941 SIAH2O43255 324 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 SYNGR2O43760 224 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 PLAUP00749 431 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 DUTP33316 252 aaKnown RBP11.73□□□□□ -0.53
LIG3-205ENST00000585941 ARHGDIBP52566 201 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 C4orf17Q53FE4 359 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 BTNL3Q6UXE8 466 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 Q6ZRM9 215 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 RAB39BQ96DA2 213 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 ADTRPQ96IZ2 230 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 SMIM3Q9BZL3 60 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 IFI27L2Q9H2X8 130 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 COL6A6A6NMZ7 2263 aa11.73□□□□□ -0.53
LIG3-205ENST00000585941 IGSF23A1L1A6 192 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 FAM24AA6NFZ4 105 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 C17orf98A8MV24 154 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 RAB29O14966 203 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 RAMP3O60896 148 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 SEC11BP0C7V7 166 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 P0C879 139 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 LOXP28300 417 aaPredicted RBP11.72□□□□□ -0.53
LIG3-205ENST00000585941 RPL31P62899 125 aaKnown RBP11.72□□□□□ -0.53
LIG3-205ENST00000585941 NHLH2Q02577 135 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 TOR2AQ5JU69 321 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 TCF23Q7RTU1 214 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 STX12Q86Y82 276 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 SMIM8Q96KF7 97 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 GINS3Q9BRX5 216 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 BARX1Q9HBU1 254 aaPredicted RBP11.72□□□□□ -0.53
LIG3-205ENST00000585941 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.72□□□□□ -0.53
LIG3-205ENST00000585941 CACFD1Q9UGQ2 172 aa11.72□□□□□ -0.53
LIG3-205ENST00000585941 RPUSD1Q9UJJ7 312 aaKnown RBP11.72□□□□□ -0.53
LIG3-205ENST00000585941 FAM90A9PA6NNJ1 464 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 LINC00473A8K010 186 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 M0R1X1 148 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 S1PR2O95136 353 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 HPRT1P00492 218 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 KRASP01116 189 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 FGF2P09038 288 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 FAM157CP0CG43 387 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 OMGP23515 440 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 SULT1A2P50226 295 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 BLOC1S1P78537 153 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 ZNF816Q0VGE8 651 aaPredicted RBP11.71□□□□□ -0.53
LIG3-205ENST00000585941 CDSNQ15517 529 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 H2BFWTQ7Z2G1 175 aa11.71□□□□□ -0.53
LIG3-205ENST00000585941 LY86O95711 162 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 DAOP14920 347 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 NFYBP25208 207 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 G6PCP35575 357 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 THBS3P49746 956 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms