RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ZNF833PQ6ZTB9 187 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 KCTD9Q7L273 389 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 RTN4IP1Q8WWV3 396 aaPredicted RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 ADTRPQ96IZ2 230 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 HSD17B10Q99714 261 aaKnown RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 MYO9AB2RTY4 2548 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 ITPR3Q14573 2671 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 CENPVL3A0A0U1RRI6 287 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 CRYM-AS1A6NIL9 109 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 MPPED1O15442 326 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 TXNL1O43396 289 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 CD5LO43866 347 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 PGLYRP1O75594 196 aaPredicted RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 AKR1C4P17516 323 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 ANXA7P20073 488 aaKnown RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 BPIFB3P59826 476 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 PRB3Q04118 309 aaPredicted RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 EIF4EBP1Q13541 118 aaPredicted RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 GPR157Q5UAW9 335 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 SGPP2Q8IWX5 399 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 ADAD2Q8NCV1 583 aaKnown RBP8.73□□□□□ -1.01
SS18-213ENST00000579640 ST6GALNAC6Q969X2 333 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 TMEM230Q96A57 120 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 C18orf12Q96KH6 178 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 ZNF251Q9BRH9 671 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 NAA60Q9H7X0 242 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 DPM3Q9P2X0 92 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 KCNIP3Q9Y2W7 256 aa8.73□□□□□ -1.01
SS18-213ENST00000579640 TEX15Q9BXT5 2789 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 IGHV1-69DA0A0B4J2H0 117 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 TEX13DA0A0J9YY54 714 aaPredicted RBP8.72□□□□□ -1.01
SS18-213ENST00000579640 OOSP1A8MZH6 123 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 LY6LH3BQJ8 138 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 M0R1X1 148 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 IGHV1-69P01742 117 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 OR4E1P0C645 316 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 ANXA3P12429 323 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 EPHA1P21709 976 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 THBS3P49746 956 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 RAB25P57735 213 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 C4orf46Q504U0 113 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 RPL39P5Q59GN2 51 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 GLDNQ6ZMI3 551 aaPredicted RBP8.72□□□□□ -1.01
SS18-213ENST00000579640 Q6ZNX1 250 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 TBC1D26Q86UD7 250 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 TCTEX1D1Q8N7M0 179 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 RPEQ96AT9 228 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 GALNT14Q96FL9 552 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 C5orf30Q96GV9 206 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 GPN1Q9HCN4 374 aaPredicted RBP8.72□□□□□ -1.01
SS18-213ENST00000579640 LIN7CQ9NUP9 197 aaKnown RBP8.72□□□□□ -1.01
SS18-213ENST00000579640 ZNRD1Q9P1U0 126 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 CSMD1Q96PZ7 3565 aa8.72□□□□□ -1.01
SS18-213ENST00000579640 TRAV40A0A0B4J280 105 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 NPFFO15130 113 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 TNFSF12O43508 249 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 PROP1O75360 226 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 GAPDHP04406 335 aaKnown RBP8.71□□□□□ -1.01
SS18-213ENST00000579640 VSIG10L2P0DP72 767 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 F2RP25116 425 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 DUTP33316 252 aaKnown RBP8.71□□□□□ -1.01
SS18-213ENST00000579640 TAGLNQ01995 201 aaKnown RBP8.71□□□□□ -1.01
SS18-213ENST00000579640 ZNF816Q0VGE8 651 aaPredicted RBP8.71□□□□□ -1.01
SS18-213ENST00000579640 PPP1R1AQ13522 171 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 TPTE2P1Q5T6R2 138 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 CCDC144NLQ6NUI1 221 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 TGIF2LXQ8IUE1 241 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 PDZD9Q8IXQ8 264 aa8.71□□□□□ -1.01
SS18-213ENST00000579640 FAM212BQ9NTI7 297 aaPredicted RBP8.71□□□□□ -1.01
SS18-213ENST00000579640 AKAP9Q99996 3911 aa8.71□□□□□ -1.02
SS18-213ENST00000579640 PIGBOS1A0A0B4J2F0 54 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 C3orf85A0A1B0GTC6 90 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 SNRPGP15A8MWD9 76 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 H0Y980 276 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 SFT2D2O95562 160 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 AVPP01185 164 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 HLA-AP01891 365 aaKnown RBP8.7□□□□□ -1.02
SS18-213ENST00000579640 FOSL1P15407 271 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 VAMP1P23763 118 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 KIR2DS2P43631 304 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 TATDN3Q17R31 274 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 LYG2Q86SG7 212 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 OR8H3Q8N146 312 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 NANPQ8TBE9 248 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 CD300LFQ8TDQ1 290 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 CAPSLQ8WWF8 208 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 MALSU1Q96EH3 234 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 BEX2Q9BXY8 128 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 BEX1Q9HBH7 125 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 PRELID3BQ9Y3B1 194 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 ABCA1O95477 2261 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 A0A1W2PRD5 423 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 A0A1W2PRF3 423 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 A0A1W2PRM7 423 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 C9orf170A2RU37 121 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 C7orf66A4D0T2 115 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 IFNA2P01563 188 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 CT45A6P0DMU7 189 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 CT45A5P0DMU8 189 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 CT45A7P0DMV0 189 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms