RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ZFP57Q9NU63 452 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 OR1A1Q9P1Q5 309 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 GNG12Q9UBI6 72 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 HSPB11Q9Y547 144 aa8.37□□□□□ -1.07
SS18-210ENST00000578700 DBX1A6NMT0 343 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 CCSO14618 274 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 TFF1P04155 84 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 HOXB5P09067 269 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 OR5AC1P0C628 307 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 OR8U9P0C7N5 309 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 SRSF4Q08170 494 aaKnown RBP8.36□□□□□ -1.07
SS18-210ENST00000578700 SMCO1Q147U7 214 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 MSMO1Q15800 293 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 C2orf68Q2NKX9 166 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 ANKRD55Q3KP44 614 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 FAM201AQ5SY85 155 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 ZNF818PQ6ZRF7 136 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 ZNF695Q8IW36 515 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 TPRX1Q8N7U7 411 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 SIGLECL1Q8N7X8 197 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 ZBTB8BQ8NAP8 495 aaPredicted RBP8.36□□□□□ -1.07
SS18-210ENST00000578700 BVESQ8NE79 360 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 OR13A1Q8NGR1 328 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 OR8U1Q8NH10 309 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 OR1L1Q8NH94 360 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 TAF15Q92804 592 aaKnown RBP eCLIP8.36□□□□□ -1.07
SS18-210ENST00000578700 RAB39BQ96DA2 213 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 TIMD4Q96H15 378 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 GAFA1Q96PS6 74 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 NMES1Q9C002 83 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 GAL3ST2Q9H3Q3 398 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 LIN7CQ9NUP9 197 aaKnown RBP8.36□□□□□ -1.07
SS18-210ENST00000578700 PIPOXQ9P0Z9 390 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 SLC25A10Q9UBX3 287 aaPredicted RBP8.36□□□□□ -1.07
SS18-210ENST00000578700 JPT1Q9UK76 154 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 PAIP2BQ9ULR5 123 aaKnown RBP8.36□□□□□ -1.07
SS18-210ENST00000578700 MAB21L2Q9Y586 359 aa8.36□□□□□ -1.07
SS18-210ENST00000578700 ARHGAP32A7KAX9 2087 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 FXYD6-FXYD2A0A087WZ82 144 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 DUXBA0A1W2PPF3 345 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 ZNF729A6NN14 1252 aaPredicted RBP8.35□□□□□ -1.07
SS18-210ENST00000578700 HMSDA8MTL9 139 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 H0Y980 276 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 L7N2F9 121 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 ADAM20O43506 726 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 RP2O75695 350 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 ATG12O94817 140 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 RLN2P04090 185 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 SERPINE2P07093 398 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 RPS2P15880 293 aaKnown RBP8.35□□□□□ -1.07
SS18-210ENST00000578700 PSMB6P28072 239 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 LCN2P80188 198 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 HOXA4Q00056 320 aaPredicted RBP8.35□□□□□ -1.07
SS18-210ENST00000578700 MEF2CQ06413 473 aaPredicted RBP8.35□□□□□ -1.07
SS18-210ENST00000578700 CATR1Q13166 79 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 LY6G6FQ5SQ64 297 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 ZNF645Q8N7E2 425 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 LRTM2Q8N967 370 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 INO80EQ8NBZ0 244 aaPredicted RBP8.35□□□□□ -1.07
SS18-210ENST00000578700 OR52L2PQ8NGH6 319 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 UBALD1Q8TB05 177 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 RAB1CQ92928 201 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 SEC22AQ96IW7 307 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 C2orf50Q96LR7 162 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 SPIN2AQ99865 258 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 SPIN2BQ9BPZ2 258 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 TMEM246Q9BRR3 403 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 GON7Q9BXV9 100 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 TMEM222Q9H0R3 208 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 SLA2Q9H6Q3 261 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 CALYQ9NYX4 217 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 GSKIPQ9P0R6 139 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 TMED3Q9Y3Q3 217 aa8.35□□□□□ -1.07
SS18-210ENST00000578700 IGKV1D-13A0A0B4J2D9 117 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 A0A1W2PPH5 198 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 J3QLI3 93 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 ARPC5O15511 151 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 PGLYRP1O75594 196 aaPredicted RBP8.34□□□□□ -1.07
SS18-210ENST00000578700 ADAP1O75689 374 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 FSTL3O95633 263 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 IGKV1-13P0DP09 117 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 F2RP25116 425 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 SSTR5P35346 364 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 RAB7AP51149 207 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 MRPS11P82912 194 aaKnown RBP8.34□□□□□ -1.07
SS18-210ENST00000578700 TMEM187Q14656 261 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 IAH1Q2TAA2 248 aaPredicted RBP8.34□□□□□ -1.07
SS18-210ENST00000578700 SP6Q3SY56 376 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 ESCO2Q56NI9 601 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 TMEM268Q5VZI3 342 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 THOC7Q6I9Y2 204 aaKnown RBP8.34□□□□□ -1.07
SS18-210ENST00000578700 C11orf87Q6NUJ2 197 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 ZNF546Q86UE3 836 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 LDLRAD3Q86YD5 345 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 C9orf62Q8N4C0 152 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 FAM216BQ8N7L0 139 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 RNASE11Q8TAA1 199 aaKnown RBP8.34□□□□□ -1.07
SS18-210ENST00000578700 GRPEL2Q8TAA5 225 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 RFESDQ8TAC1 157 aa8.34□□□□□ -1.07
SS18-210ENST00000578700 PPP1R1CQ8WVI7 109 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms