RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MOB3AQ96BX8 217 aa7.45□□□□□ -1.22
VPS35-211ENST00000569950 RITA1Q96K30 269 aa7.45□□□□□ -1.22
VPS35-211ENST00000569950 GPHA2Q96T91 129 aa7.45□□□□□ -1.22
VPS35-211ENST00000569950 NABP2Q9BQ15 211 aa7.45□□□□□ -1.22
VPS35-211ENST00000569950 MRPL20Q9BYC9 149 aaKnown RBP7.45□□□□□ -1.22
VPS35-211ENST00000569950 OR2D2Q9H210 308 aa7.45□□□□□ -1.22
VPS35-211ENST00000569950 PLA2G2EQ9NZK7 142 aa7.45□□□□□ -1.22
VPS35-211ENST00000569950 A6NDX4 124 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 OOSP1A8MZH6 123 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 CLDN34H7C241 214 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 TIMM23O14925 209 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 HOXA3O43365 443 aaPredicted RBP7.44□□□□□ -1.22
VPS35-211ENST00000569950 CD24P25063 80 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 CD40LGP29965 261 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 GNRHRP30968 328 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 RAB7AP51149 207 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 PPP5CP53041 499 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 TAS2R19P59542 299 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 RPL30P62888 115 aaKnown RBP7.44□□□□□ -1.22
VPS35-211ENST00000569950 ZNF818PQ6ZRF7 136 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 ARRDC1Q8N5I2 433 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.44□□□□□ -1.22
VPS35-211ENST00000569950 OR10X1Q8NGY0 326 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 FAM216AQ8WUB2 273 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 DUX5Q96PT3 197 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 SSX3Q99909 188 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 GINS4Q9BRT9 223 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 ZNF2Q9BSG1 426 aaPredicted RBP7.44□□□□□ -1.22
VPS35-211ENST00000569950 CHIAQ9BZP6 476 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 HRASLSQ9HDD0 168 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 CCL28Q9NRJ3 127 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 SLC2A8Q9NY64 477 aa7.44□□□□□ -1.22
VPS35-211ENST00000569950 AMMECR1Q9Y4X0 333 aaPredicted RBP7.44□□□□□ -1.22
VPS35-211ENST00000569950 IGHV3-72A0A0B4J1Y9 119 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 H0YJW9 148 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 H3BUX3 64 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 RAB29O14966 203 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 RAB3DO95716 219 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 AMY1AP04745 511 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 AMY2AP04746 511 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 CSF1P09603 554 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 AKAIN1P0CW23 69 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 DUTP33316 252 aaKnown RBP7.43□□□□□ -1.22
VPS35-211ENST00000569950 LGALS4P56470 323 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 LRRC75BQ2VPJ9 315 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 ACTBL2Q562R1 376 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 RNASE10Q5GAN6 216 aaKnown RBP7.43□□□□□ -1.22
VPS35-211ENST00000569950 FAM71F2Q6NXP2 309 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 GLDNQ6ZMI3 551 aaPredicted RBP7.43□□□□□ -1.22
VPS35-211ENST00000569950 OR8H3Q8N146 312 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 ZNF645Q8N7E2 425 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 DRAXINQ8NBI3 349 aaPredicted RBP7.43□□□□□ -1.22
VPS35-211ENST00000569950 OR5AN1Q8NGI8 311 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 TAF15Q92804 592 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS35-211ENST00000569950 TOMM40LQ969M1 308 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 RPEQ96AT9 228 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 PLSCR3Q9NRY6 295 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 PIPOXQ9P0Z9 390 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 TBC1D24Q9ULP9 559 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 TCF19Q9Y242 345 aa7.43□□□□□ -1.22
VPS35-211ENST00000569950 TET2Q6N021 2002 aaPredicted RBP7.42□□□□□ -1.22
VPS35-211ENST00000569950 GAPDHP04406 335 aaKnown RBP7.42□□□□□ -1.22
VPS35-211ENST00000569950 CEACAM3P40198 252 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 LUMP51884 338 aaPredicted RBP7.42□□□□□ -1.22
VPS35-211ENST00000569950 UCP3P55916 312 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 FXYD4P59646 89 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 UBA52P62987 128 aaKnown RBP7.42□□□□□ -1.22
VPS35-211ENST00000569950 RELBQ01201 579 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 MSMO1Q15800 293 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 MRGPRG-AS1Q2M3A8 158 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 THNSL2Q86YJ6 484 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 TGIF2LXQ8IUE1 241 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 TMEM86BQ8N661 226 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 BVESQ8NE79 360 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 OR51S1Q8NGJ8 323 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 SSMEM1Q8WWF3 244 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 S100ZQ8WXG8 99 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 RSRP1Q9BUV0 290 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 CCDC32Q9BV29 185 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 GHITMQ9H3K2 345 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 TAS2R8Q9NYW2 309 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 VPREB3Q9UKI3 123 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 FAM96BQ9Y3D0 163 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 POMT1Q9Y6A1 747 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 ANK2Q01484 3957 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 VWFP04275 2813 aa7.42□□□□□ -1.22
VPS35-211ENST00000569950 M0R1X1 148 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 TXNL1O43396 289 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 IGLV2-23P01705 113 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 IGKV1-16P04430 117 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 RNASE1P07998 156 aaKnown RBP7.41□□□□□ -1.22
VPS35-211ENST00000569950 SNRNP70P08621 437 aaKnown RBP7.41□□□□□ -1.22
VPS35-211ENST00000569950 VSIG10L2P0DP72 767 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 IL3RAP26951 378 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 CNTFRP26992 372 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 CD1BP29016 333 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 GPR12P47775 334 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 BAMBIQ13145 260 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 MEF2DQ14814 521 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 LY6EQ16553 131 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms