RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 CTDSP2O14595 271 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 FGF16O43320 207 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 TXNL1O43396 289 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 SCGNO76038 276 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 RGS11O94810 467 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 NDUFA3O95167 84 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 MOSP00540 346 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 IGHG2P01859 326 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 APOA1P02647 267 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 IGKV1-16P04430 117 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 FCER2P06734 321 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 LPLP06858 475 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 OR8U9P0C7N5 309 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 CD28P10747 220 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 NFYAP23511 347 aaPredicted RBP7.77□□□□□ -1.17
CLN3-220ENST00000566040 IL3RAP26951 378 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 TMBIM6P55061 237 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 GNG2P59768 71 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 C19orf54Q5BKX5 351 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 PRR31Q5SQ13 230 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 FOXB2Q5VYV0 432 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 LAX1Q8IWV1 398 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 OR8U1Q8NH10 309 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 GPX8Q8TED1 209 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 S1PR3Q99500 378 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 ST6GALNAC5Q9BVH7 336 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 PRSS22Q9GZN4 317 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 NXF2Q9GZY0 626 aaKnown RBP7.77□□□□□ -1.17
CLN3-220ENST00000566040 OR2D2Q9H210 308 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 TPSG1Q9NRR2 321 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 GAB2Q9UQC2 676 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 FBXO7Q9Y3I1 522 aa7.77□□□□□ -1.17
CLN3-220ENST00000566040 HAX1O00165 279 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 RAB29O14966 203 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 IGLV2-23P01705 113 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 FAM106CPP0CH98 169 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 ZNF182P17025 639 aaPredicted RBP7.76□□□□□ -1.17
CLN3-220ENST00000566040 RORCP51449 518 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 ACTBP60709 375 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 RPL30P62888 115 aaKnown RBP7.76□□□□□ -1.17
CLN3-220ENST00000566040 ARL6IP1Q15041 203 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 CNIH2Q6PI25 160 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 LYSMD2Q8IV50 215 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 C11orf44Q8N8P7 122 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 BEST4Q8NFU0 473 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 NPBQ8NG41 125 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 OR2T10Q8NGZ9 312 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 OR2T6Q8NHC8 308 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 RAB2BQ8WUD1 216 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 EDARADDQ8WWZ3 215 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 CMTM3Q96MX0 182 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 NOL4LQ96MY1 436 aaPredicted RBP7.76□□□□□ -1.17
CLN3-220ENST00000566040 ABHD1Q96SE0 405 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 GPHA2Q96T91 129 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 BCL7BQ9BQE9 202 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 CCDC59Q9P031 241 aaKnown RBP7.76□□□□□ -1.17
CLN3-220ENST00000566040 PIPOXQ9P0Z9 390 aa7.76□□□□□ -1.17
CLN3-220ENST00000566040 OR5H14A6NHG9 310 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 SRRM4A7MD48 611 aaKnown RBP7.75□□□□□ -1.17
CLN3-220ENST00000566040 HSPA12AO43301 675 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 CRYGBP07316 175 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 VSIG10L2P0DP72 767 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 EGR2P11161 476 aaPredicted RBP7.75□□□□□ -1.17
CLN3-220ENST00000566040 AADACP22760 399 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 DUTP33316 252 aaKnown RBP7.75□□□□□ -1.17
CLN3-220ENST00000566040 VDAC2P45880 294 aaPredicted RBP7.75□□□□□ -1.17
CLN3-220ENST00000566040 GPR12P47775 334 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 PITPNAQ00169 270 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 CD83Q01151 205 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 HES1Q14469 280 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 TMEM69Q5SWH9 247 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.75□□□□□ -1.17
CLN3-220ENST00000566040 OR10J5Q8NHC4 309 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 ACOT12Q8WYK0 555 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 SOSTQ9BQB4 213 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 FXYD6Q9H0Q3 95 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 LIN7CQ9NUP9 197 aaKnown RBP7.75□□□□□ -1.17
CLN3-220ENST00000566040 LINC00527Q9UJ94 153 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 ADAM30Q9UKF2 790 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 OR2W1Q9Y3N9 320 aa7.75□□□□□ -1.17
CLN3-220ENST00000566040 IGHV7-81A0A0B4J1V7 117 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 M0R1X1 148 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 FCN1O00602 326 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 TALDO1P37837 337 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 ARHGDIBP52566 201 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 C5orf64Q2M2E5 130 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 C18orf65Q6ZTR6 163 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 OVCH2Q7RTZ1 564 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 S100A16Q96FQ6 103 aaKnown RBP7.74□□□□□ -1.17
CLN3-220ENST00000566040 CITED2Q99967 270 aaPredicted RBP7.74□□□□□ -1.17
CLN3-220ENST00000566040 DIABLOQ9NR28 239 aa7.74□□□□□ -1.17
CLN3-220ENST00000566040 J3QRK9 145 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 M0QZK8 103 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 NBR2O15453 112 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 SOX15O60248 233 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 HLA-DRB1P01911 266 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 RFX2P48378 723 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 CRIP2P52943 208 aaPredicted RBP7.73□□□□□ -1.17
CLN3-220ENST00000566040 DGCR2P98153 550 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 PSG5Q15238 335 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms