RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SCPEP1Q9HB40 452 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 NECAP2Q9NVZ3 263 aa13.8□□□□□ -0.2
CLN3-217ENST00000565354 CLPSL1A2RUU4 121 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 J3QRK9 145 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 OR2F2O95006 317 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 NFYAP23511 347 aaPredicted RBP13.79□□□□□ -0.2
CLN3-217ENST00000565354 CD1BP29016 333 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 C1QL4Q86Z23 238 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 H1FOOQ8IZA3 346 aaPredicted RBP13.79□□□□□ -0.2
CLN3-217ENST00000565354 OR2T10Q8NGZ9 312 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 RBM14Q96PK6 669 aaKnown RBP13.79□□□□□ -0.2
CLN3-217ENST00000565354 SLIRPQ9GZT3 109 aaKnown RBP13.79□□□□□ -0.2
CLN3-217ENST00000565354 TOLLIPQ9H0E2 274 aa13.79□□□□□ -0.2
CLN3-217ENST00000565354 FAM90A9PA6NNJ1 464 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 SULT1C2O00338 296 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 LUMP51884 338 aaPredicted RBP13.78□□□□□ -0.2
CLN3-217ENST00000565354 KRTAP10-3P60369 221 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 LSAMPQ13449 338 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 IL18Q14116 193 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 CDK10Q15131 360 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 Q6ZSV7 163 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 OR5AP2Q8NGF4 316 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 AGMATQ9BSE5 352 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 PRSS22Q9GZN4 317 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 RANBP3Q9H6Z4 567 aaPredicted RBP13.78□□□□□ -0.2
CLN3-217ENST00000565354 MOB4Q9Y3A3 225 aa13.78□□□□□ -0.2
CLN3-217ENST00000565354 DPPA5A6NC42 116 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 MOSP00540 346 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 OR5H8P0DN80 308 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 S100A5P33763 92 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 RCVRNP35243 200 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 TAS2R46P59540 309 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 HABP2Q14520 560 aaPredicted RBP13.77□□□□□ -0.21
CLN3-217ENST00000565354 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.77□□□□□ -0.21
CLN3-217ENST00000565354 OR5H2Q8NGV7 314 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 OR2T6Q8NHC8 308 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 GPX8Q8TED1 209 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 SNAPC3Q92966 411 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 DGCR14Q96DF8 476 aaKnown RBP13.77□□□□□ -0.21
CLN3-217ENST00000565354 EAF1Q96JC9 268 aaPredicted RBP13.77□□□□□ -0.21
CLN3-217ENST00000565354 NABP2Q9BQ15 211 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 EHFQ9NZC4 300 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 RABL2AQ9UBK7 228 aaPredicted RBP13.77□□□□□ -0.21
CLN3-217ENST00000565354 RABL2BQ9UNT1 228 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 OR2W1Q9Y3N9 320 aa13.77□□□□□ -0.21
CLN3-217ENST00000565354 NCBP2LA6PVI3 153 aaKnown RBP13.76□□□□□ -0.21
CLN3-217ENST00000565354 ZNF736B4DX44 427 aaPredicted RBP13.76□□□□□ -0.21
CLN3-217ENST00000565354 H7C2Y5 167 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 M0QZK8 103 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 M0R1X1 148 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 TSPAN9O75954 239 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 TPPPO94811 219 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 FCGR2CP31995 323 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 C9orf152Q5JTZ5 239 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 PYHIN1Q6K0P9 492 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 GLDNQ6ZMI3 551 aaPredicted RBP13.76□□□□□ -0.21
CLN3-217ENST00000565354 FCAMRQ8WWV6 532 aa13.76□□□□□ -0.21
CLN3-217ENST00000565354 NXF2Q9GZY0 626 aaKnown RBP13.76□□□□□ -0.21
CLN3-217ENST00000565354 PEX14O75381 377 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 RBBP9O75884 186 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 APOA2P02652 100 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 PMP2P02689 132 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 HLA-DMAP28067 261 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 ACTBP60709 375 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 HERV-K104P61576 105 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 MRPS10P82664 201 aaKnown RBP13.75□□□□□ -0.21
CLN3-217ENST00000565354 FAM131AQ6UXB0 335 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 DRAXINQ8NBI3 349 aaPredicted RBP13.75□□□□□ -0.21
CLN3-217ENST00000565354 ZNF251Q9BRH9 671 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 C16orf95Q9H693 158 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 SDHAF2Q9NX18 166 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 ANAPC10Q9UM13 185 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 RNF114Q9Y508 228 aa13.75□□□□□ -0.21
CLN3-217ENST00000565354 OR5H14A6NHG9 310 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 SLC22A5O76082 557 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 TSPAN15O95858 294 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 CT45A6P0DMU7 189 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 CT45A5P0DMU8 189 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 CT45A7P0DMV0 189 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 NAT1P18440 290 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 MC5RP33032 325 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 FXYD4P59646 89 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 CBX3Q13185 183 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 EBI3Q14213 229 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 ABCA11PQ4W5N1 156 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 ZNF645Q8N7E2 425 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 OR52I2Q8NH67 350 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 LINC01006Q8NI28 216 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 ABHD1Q96SE0 405 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 GAB2Q9UQC2 676 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 WASHC3Q9Y3C0 194 aa13.74□□□□□ -0.21
CLN3-217ENST00000565354 FABP12A6NFH5 140 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 FGF16O43320 207 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 PPYP01298 95 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 AADACP22760 399 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 TNFSF8P32971 234 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 HRH1P35367 487 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 RFX2P48378 723 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 TSPAN5P62079 268 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 BLCAPP62952 87 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms