RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 FAM90A7PA6NKC0 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A22PA8MWA6 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A12PA8MX19 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A5PA8MXJ8 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A23PA8MXZ1 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A15PP0C7V4 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A13PP0C7W8 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A14PP0C7W9 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 FAM90A24PP0C7X0 464 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 CHRNB4P30926 498 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 MMDQ15546 238 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 IGFBP7Q16270 282 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 SRSF7Q16629 238 aaKnown RBP eCLIP13.95□□□□□ -0.18
TPM1-228ENST00000560975 TRIM61Q5EBN2 209 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 TMEM14EPQ6UXP3 125 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 CPEB3Q8NE35 698 aaKnown RBP13.95□□□□□ -0.18
TPM1-228ENST00000560975 OR1L1Q8NH94 360 aa13.95□□□□□ -0.18
TPM1-228ENST00000560975 SCRG1O75711 98 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 UBE2NP61088 152 aaKnown RBP13.94□□□□□ -0.18
TPM1-228ENST00000560975 NUFIP2Q7Z417 695 aaKnown RBP13.94□□□□□ -0.18
TPM1-228ENST00000560975 BAGE3Q86Y29 109 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 BAGE2Q86Y30 109 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 FGFRL1Q8N441 504 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 ZNF709Q8N972 641 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 MSMO1Q15800 293 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 COL5A1-AS1Q5SY13 56 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 ZNF391Q9UJN7 358 aa13.94□□□□□ -0.18
TPM1-228ENST00000560975 TRAV38-1A0A0B4J264 116 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 IGHV1OR15-9A0A0B4J2B8 117 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 MDFIC2A0A1B0GVS7 189 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 KRASP01116 189 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 IGLV3-19P01714 112 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 CRISP2P16562 243 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 KRTDAPP60985 99 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 CARFQ8N187 725 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 SFRP2Q96HF1 295 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 TMEM147Q9BVK8 224 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 PARD6GQ9BYG4 376 aaPredicted RBP13.93□□□□□ -0.18
TPM1-228ENST00000560975 RNF114Q9Y508 228 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 DKK1O94907 266 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 KITLGP21583 273 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 YRDCQ86U90 279 aaKnown RBP13.93□□□□□ -0.18
TPM1-228ENST00000560975 Q8NFD4 153 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 OR5AU1Q8NGC0 362 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 TECTBQ96PL2 329 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 TRAV24A0A0B4J272 114 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 CD27P26842 260 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 CDC34P49427 236 aaPredicted RBP13.93□□□□□ -0.18
TPM1-228ENST00000560975 KRTAP27-1Q3LI81 207 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 CPT1CQ8TCG5 803 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 CIB3Q96Q77 187 aaPredicted RBP13.93□□□□□ -0.18
TPM1-228ENST00000560975 NPCDR1Q9BY65 106 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 MTIF3Q9H2K0 278 aaKnown RBP13.93□□□□□ -0.18
TPM1-228ENST00000560975 ASCL3Q9NQ33 180 aa13.93□□□□□ -0.18
TPM1-228ENST00000560975 F6UZH7 168 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 FRMD6-AS1P0C7T7 363 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 LIFP15018 202 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 G6PCP35575 357 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 PAFAH1B2P68402 229 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 FOXL1Q12952 345 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 RABEPKQ7Z6M1 372 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 ZDHHC16Q969W1 377 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 CLEC1BQ9P126 229 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 ZFP30Q9Y2G7 519 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 CEP290O15078 2479 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 LHX2P50458 406 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 ZXDAP98168 799 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 ZNF90Q03938 601 aa13.92□□□□□ -0.18
TPM1-228ENST00000560975 ZNF816Q0VGE8 651 aaPredicted RBP13.92□□□□□ -0.18
TPM1-228ENST00000560975 MRPL52Q86TS9 123 aaKnown RBP13.92□□□□□ -0.18
TPM1-228ENST00000560975 LIN7CQ9NUP9 197 aaKnown RBP13.92□□□□□ -0.18
TPM1-228ENST00000560975 USF3Q68DE3 2245 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 CXCL13O43927 109 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 CBR3O75828 277 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 DSCR4P56555 118 aaPredicted RBP13.91□□□□□ -0.18
TPM1-228ENST00000560975 RANP62826 216 aaKnown RBP13.91□□□□□ -0.18
TPM1-228ENST00000560975 TSTD1Q8NFU3 115 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 OR10P1Q8NGE3 313 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 STRADBQ9C0K7 418 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 MRPL18Q9H0U6 180 aaKnown RBP13.91□□□□□ -0.18
TPM1-228ENST00000560975 ZNF552Q9H707 407 aaPredicted RBP13.91□□□□□ -0.18
TPM1-228ENST00000560975 TRBV20OR9-2A0A075B6H5 130 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 A0A096LPE4 126 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 A0A1W2PPZ6 126 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 SLC17A3O00476 420 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 ZG16O60844 167 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 RAMP3O60896 148 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 MRPL21Q7Z2W9 205 aaKnown RBP13.91□□□□□ -0.18
TPM1-228ENST00000560975 OR5A2Q8NGI9 324 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 BTF3L4Q96K17 158 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 FBXL7Q9UJT9 491 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 FREM1Q5H8C1 2179 aa13.91□□□□□ -0.18
TPM1-228ENST00000560975 TRAV34A0A0B4J273 112 aa13.9□□□□□ -0.18
TPM1-228ENST00000560975 RBMXL2O75526 392 aaKnown RBP13.9□□□□□ -0.18
TPM1-228ENST00000560975 ANKRD39Q53RE8 183 aa13.9□□□□□ -0.18
TPM1-228ENST00000560975 Q6ZVH6 145 aa13.9□□□□□ -0.18
TPM1-228ENST00000560975 MCEMP1Q8IX19 187 aa13.9□□□□□ -0.18
TPM1-228ENST00000560975 SLC35E1Q96K37 410 aa13.9□□□□□ -0.18
TPM1-228ENST00000560975 PIGBOS1A0A0B4J2F0 54 aa13.9□□□□□ -0.18
TPM1-228ENST00000560975 SIRPB1O00241 398 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms