RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 HIST1H2BCP62807 126 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CCL20P78556 96 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HLA-DRB3P79483 266 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 PSG4Q00888 419 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 RUNX1Q01196 453 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ZNF92Q03936 586 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 TLE4Q04727 773 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ZFP36L1Q07352 338 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 IL24Q13007 206 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CHAF1BQ13112 559 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 KIAA0141Q14154 515 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 KIR2DS1Q14954 304 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ELOBQ15370 118 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST2H2BEQ16778 126 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CEACAM16Q2WEN9 425 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 SP6Q3SY56 376 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 DMRTC1Q5HYR2 192 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 PYY3Q5JQD4 70 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR2B11Q5JQS5 317 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 COA6Q5JTJ3 125 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 KRBOX4Q5JUW0 171 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 AKR1C8PQ5T2L2 129 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 RAET1LQ5VY80 246 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 PLCXD3Q63HM9 321 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ZNF774Q6NX45 483 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 GUSBP11Q6P575 273 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CLEC9AQ6UXN8 241 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ZNF818PQ6ZRF7 136 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CYP2G1PQ6ZSU1 146 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 MOB1BQ7L9L4 216 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 TBC1D26Q86UD7 250 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 H1FOOQ8IZA3 346 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 C1orf87Q8N0U7 546 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST3H2BBQ8N257 126 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 GAPTQ8N292 157 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 FAM24BQ8N5W8 94 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 DEFB119Q8N690 84 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ZNF525Q8N782 197 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ZNF611Q8N823 705 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CYB561D1Q8N8Q1 229 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR5C1Q8NGR4 320 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR2G3Q8NGZ4 309 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR5R1Q8NH85 324 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR2V1Q8NHB1 315 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CA5BP1Q8WTZ4 195 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 KCNE4Q8WWG9 221 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 MBD3L1Q8WWY6 194 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 NAT6Q93015 286 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST1H2BHQ93079 126 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 MR1Q95460 341 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 LSM10Q969L4 123 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 CPNE4Q96A23 557 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 TVP23CQ96ET8 276 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ALKBH3Q96Q83 286 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST1H2AAQ96QV6 131 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR6C1Q96RD1 312 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 P2RX4Q99571 388 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST1H2BNQ99877 126 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 HIST1H2BMQ99879 126 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 PYGO2Q9BRQ0 406 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 NIPSNAP3BQ9BS92 247 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 AGMATQ9BSE5 352 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 C20orf24Q9BUV8 137 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 GGACTQ9BVM4 153 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 PAPOLGQ9BWT3 736 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 PHF7Q9BWX1 381 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 DEFB126Q9BYW3 111 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 LINC00470Q9BZP3 86 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 OR2H1Q9GZK4 316 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 EIF5A2Q9GZV4 153 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 TOLLIPQ9H0E2 274 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 PARP12Q9H0J9 701 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 CALHM2Q9HA72 323 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ELL3Q9HB65 397 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 CDH20Q9HBT6 801 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 SLC7A10Q9NS82 523 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 TMEM242Q9NWH2 141 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 CISD1Q9NZ45 108 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 DOK5Q9P104 306 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 RNF150Q9ULK6 438 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 SLC7A11Q9UPY5 501 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 LAMP3Q9UQV4 416 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 ST3GAL6Q9Y274 331 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 MRPS18CQ9Y3D5 142 aaKnown RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 TIMM9Q9Y5J7 89 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 LIPGQ9Y5X9 500 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 WSB1Q9Y6I7 421 aa2.06□□□□□ -2.08
SPG11-223ENST00000560858 TET2Q6N021 2002 aaPredicted RBP2.06□□□□□ -2.08
SPG11-223ENST00000560858 USF3Q68DE3 2245 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 TGIF2-C20orf24A0A0A6YYL0 155 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 A0A0G2JMM0 328 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 A0A1W2PPB8 328 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 A0A1W2PRS3 328 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 MED19A0JLT2 244 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR5H1A6NKK0 313 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR5B21A6NL26 309 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 KIR3DP1A8MWS1 328 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 C9J4A7 227 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 FAM90A26D6RGX4 464 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms