RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ATRQ13535 2644 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 TRIM77I1YAP6 450 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 PPYP01298 95 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 IGLV2-14P01704 120 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 CT45A6P0DMU7 189 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 CT45A5P0DMU8 189 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 CT45A7P0DMV0 189 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 LUMP51884 338 aaPredicted RBP17.45■□□□□ 0.38
SNX1-210ENST00000560260 PYDC2Q56P42 97 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 SPANXN2Q5MJ10 180 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 VAX1Q5SQQ9 334 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 MFSD4AQ8N468 514 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.45■□□□□ 0.38
SNX1-210ENST00000560260 TMEM229BQ8NBD8 167 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 OR4D10Q8NGI6 311 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 CAPSLQ8WWF8 208 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 GIMAP1Q8WWP7 306 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 S1PR3Q99500 378 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 FXYD6Q9H0Q3 95 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 ZNF221Q9UK13 617 aa17.45■□□□□ 0.38
SNX1-210ENST00000560260 RBM7Q9Y580 266 aaKnown RBP17.45■□□□□ 0.38
SNX1-210ENST00000560260 FAM181BA6NEQ2 426 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 CD74P04233 296 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 PTBP1P26599 531 aaKnown RBP eCLIP17.44■□□□□ 0.38
SNX1-210ENST00000560260 BRS3P32247 399 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 ARHGDIBP52566 201 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 SSBP1Q04837 148 aaKnown RBP17.44■□□□□ 0.38
SNX1-210ENST00000560260 C16orf87Q6PH81 154 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 GLDNQ6ZMI3 551 aaPredicted RBP17.44■□□□□ 0.38
SNX1-210ENST00000560260 DRAXINQ8NBI3 349 aaPredicted RBP17.44■□□□□ 0.38
SNX1-210ENST00000560260 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.44■□□□□ 0.38
SNX1-210ENST00000560260 FAM216AQ8WUB2 273 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 SDHCQ99643 169 aaPredicted RBP17.44■□□□□ 0.38
SNX1-210ENST00000560260 ZNF2Q9BSG1 426 aaPredicted RBP17.44■□□□□ 0.38
SNX1-210ENST00000560260 GAB2Q9UQC2 676 aa17.44■□□□□ 0.38
SNX1-210ENST00000560260 M0R1X1 148 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 IGKV1D-33P01593 117 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 IGKV1-33P01594 117 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 FXYD4P59646 89 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 ACTBL2Q562R1 376 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 FAAP20Q6NZ36 180 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 DHRS11Q6UWP2 260 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 GHITMQ9H3K2 345 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 AKIP1Q9NQ31 210 aa17.43■□□□□ 0.38
SNX1-210ENST00000560260 ANKRD20A5PA0PJZ0 165 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 CD1BP29016 333 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 TAS2R19P59542 299 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 EBI3Q14213 229 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 RNASE10Q5GAN6 216 aaKnown RBP17.42■□□□□ 0.38
SNX1-210ENST00000560260 THNSL2Q86YJ6 484 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 Q8N402 240 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 ZNF645Q8N7E2 425 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 ZNF383Q8NA42 475 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 ZFAND2BQ8WV99 257 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 MOB3AQ96BX8 217 aa17.42■□□□□ 0.38
SNX1-210ENST00000560260 THAP7Q9BT49 309 aaPredicted RBP17.42■□□□□ 0.38
SNX1-210ENST00000560260 ZNF107Q9UII5 783 aaPredicted RBP17.42■□□□□ 0.38
SNX1-210ENST00000560260 H0YJW9 148 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 RELBQ01201 579 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 STEAP1BQ6NZ63 245 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 TMEM17Q86X19 198 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 Q8N6K4 173 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 SECTM1Q8WVN6 248 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 EAF1Q96JC9 268 aaPredicted RBP17.41■□□□□ 0.38
SNX1-210ENST00000560260 CCL28Q9NRJ3 127 aa17.41■□□□□ 0.38
SNX1-210ENST00000560260 RAB3DO95716 219 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 CSF1P09603 554 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 ZNF735P0CB33 412 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 TBPP20226 339 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 HERV-K104P61576 105 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 EIF4EBP1Q13541 118 aaPredicted RBP17.4■□□□□ 0.38
SNX1-210ENST00000560260 HNF4GQ14541 408 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 OR4C16Q8NGL9 310 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 GPHA2Q96T91 129 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 C1RLQ9NZP8 487 aa17.4■□□□□ 0.38
SNX1-210ENST00000560260 OR5H14A6NHG9 310 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 FAM106CPP0CH98 169 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 TMEM11P17152 192 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 DUTP33316 252 aaKnown RBP17.39■□□□□ 0.37
SNX1-210ENST00000560260 KLF9Q13886 244 aaPredicted RBP17.39■□□□□ 0.37
SNX1-210ENST00000560260 HES1Q14469 280 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 BAK1Q16611 211 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 LIAT1Q6ZQX7 453 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 LHFPL1Q86WI0 220 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 OR5AN1Q8NGI8 311 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 OR6F1Q8NGZ6 308 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 RBM14Q96PK6 669 aaKnown RBP17.39■□□□□ 0.37
SNX1-210ENST00000560260 SLC25A33Q9BSK2 321 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 SLC5A7Q9GZV3 580 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 PITPNC1Q9UKF7 332 aa17.39■□□□□ 0.37
SNX1-210ENST00000560260 LINC00473A8K010 186 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 OR2F2O95006 317 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 TSPAN5P62079 268 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 RPL30P62888 115 aaKnown RBP17.38■□□□□ 0.37
SNX1-210ENST00000560260 AADACL3Q5VUY0 350 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 ZNF818PQ6ZRF7 136 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 LINC00299Q6ZSB3 139 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 DDB2Q92466 427 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 RITA1Q96K30 269 aa17.38■□□□□ 0.37
SNX1-210ENST00000560260 AKAIN1P0CW23 69 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms