RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 Q8N1Y9 231 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 SETD6Q8TBK2 473 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 CYGBQ8WWM9 190 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 GGHQ92820 318 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 TMEM68Q96MH6 324 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 TSNAXQ99598 290 aaKnown RBP7.05□□□□□ -1.28
HDDC3-204ENST00000559834 SULT4A1Q9BR01 284 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 C19orf73Q9NVV2 129 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 PLEKHJ1Q9NW61 149 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 ZNF221Q9UK13 617 aa7.05□□□□□ -1.28
HDDC3-204ENST00000559834 H3BUA1 57 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 MYL12BO14950 172 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 SPDEFO95238 335 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 CNIH1O95406 144 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 NAPSAO96009 420 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 ARSBP15848 533 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 CEACAM6P40199 344 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 VEGFCP49767 419 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 WNT4P56705 351 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 RPS27AP62979 156 aaKnown RBP7.04□□□□□ -1.28
HDDC3-204ENST00000559834 FXYD3Q14802 87 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 PSG5Q15238 335 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 SVOPQ8N4V2 548 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 DHRSXQ8N5I4 330 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 MS4A15Q8N5U1 240 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 ABHD14BQ96IU4 210 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 SPATA25Q9BR10 227 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 AGMATQ9BSE5 352 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 FAM103A1Q9BTL3 118 aaKnown RBP7.04□□□□□ -1.28
HDDC3-204ENST00000559834 TMEM59Q9BXS4 323 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 TUBA4BQ9H853 241 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 C8orf4Q9NR00 106 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 STAB2Q8WWQ8 2551 aa7.04□□□□□ -1.28
HDDC3-204ENST00000559834 TRBV6-6A0A0A6YYG2 114 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 BPNT1O95861 308 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 CA2P00918 260 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 APOA2P02652 100 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 AADACP22760 399 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 HTR2CP28335 458 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 LGALS7P47929 136 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 KLF5Q13887 457 aaPredicted RBP7.03□□□□□ -1.28
HDDC3-204ENST00000559834 ACSM3Q53FZ2 586 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 C1orf100Q5SVJ3 147 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 OR10K2Q6IF99 312 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 ZNF880Q6PDB4 577 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 GTSCR1Q86UQ5 136 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 PDPNQ86YL7 162 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 POC5Q8NA72 575 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 DRAXINQ8NBI3 349 aaPredicted RBP7.03□□□□□ -1.28
HDDC3-204ENST00000559834 OR9G4Q8NGQ1 327 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 GRPEL2Q8TAA5 225 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 IL17DQ8TAD2 202 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 PHYHIPQ92561 330 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 PTX4Q96A99 478 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 URM1Q9BTM9 101 aaKnown RBP7.03□□□□□ -1.28
HDDC3-204ENST00000559834 TM2D1Q9BX74 207 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 C11orf54Q9H0W9 315 aaPredicted RBP7.03□□□□□ -1.28
HDDC3-204ENST00000559834 EDA2RQ9HAV5 297 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 GAB2Q9UQC2 676 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 TENM2Q9NT68 2774 aa7.03□□□□□ -1.28
HDDC3-204ENST00000559834 ANKRD34BA5PLL1 514 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 SRMP19623 302 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 RANBP1P43487 201 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 LCN12Q6JVE5 192 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 HAPLN4Q86UW8 402 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 NANOGP1Q8N7R0 232 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 OR5T1Q8NG75 326 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 USMG5Q96IX5 58 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 GAR1Q9NY12 217 aaKnown RBP7.02□□□□□ -1.29
HDDC3-204ENST00000559834 PEF1Q9UBV8 284 aaKnown RBP7.02□□□□□ -1.29
HDDC3-204ENST00000559834 PSORS1C1Q9UIG5 152 aa7.02□□□□□ -1.29
HDDC3-204ENST00000559834 RYR3Q15413 4870 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 TMEM14DPA8MWL7 114 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 SLC25A17O43808 307 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 BRI3O95415 125 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 IGKV1-16P04430 117 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 SERPINB10P48595 397 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 SYNJ2BPP57105 145 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 HLA-DRB3P79483 266 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 TAGLNQ01995 201 aaKnown RBP7.01□□□□□ -1.29
HDDC3-204ENST00000559834 CBX3Q13185 183 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 HAGHQ16775 308 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 RBM48Q5RL73 367 aaKnown RBP7.01□□□□□ -1.29
HDDC3-204ENST00000559834 AHSA2Q719I0 299 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 CEACAM19Q7Z692 300 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 LRRTM1Q86UE6 522 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 C8orf59Q8N0T1 100 aaPredicted RBP7.01□□□□□ -1.29
HDDC3-204ENST00000559834 Q8N402 240 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 PACRGLQ8N7B6 248 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 ZNF383Q8NA42 475 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.01□□□□□ -1.29
HDDC3-204ENST00000559834 BPIFB6Q8NFQ5 453 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 OR6M1Q8NGM8 313 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 CYYR1Q96J86 154 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 NICN1Q9BSH3 213 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 TMED9Q9BVK6 235 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 PARP12Q9H0J9 701 aaKnown RBP7.01□□□□□ -1.29
HDDC3-204ENST00000559834 Q9N2K0 584 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 SLC35D1Q9NTN3 355 aa7.01□□□□□ -1.29
HDDC3-204ENST00000559834 PLCXD1Q9NUJ7 323 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms