RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 VSIRQ9H7M9 311 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 PATZ1Q9HBE1 687 aaKnown RBP9.26□□□□□ -0.93
USP3-206ENST00000558157 CTXND1A0A1B0GTU2 59 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 SERPINA7P05543 415 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 CRISP2P16562 243 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 MLF1P58340 268 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 SRSF7Q16629 238 aaKnown RBP eCLIP9.26□□□□□ -0.93
USP3-206ENST00000558157 Q6ZN92 141 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 RPS19BP1Q86WX3 136 aaKnown RBP9.26□□□□□ -0.93
USP3-206ENST00000558157 RNF138Q8WVD3 245 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 OR5P3Q8WZ94 311 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 PGAM5Q96HS1 289 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 ZDHHC11Q9H8X9 412 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 SLC35D1Q9NTN3 355 aa9.26□□□□□ -0.93
USP3-206ENST00000558157 TMEM238LA0A1B0GVL6 79 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 C2orf72A6NCS6 295 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 H0Y980 276 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 HYPMO75409 117 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 REG1AP05451 166 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 TNFSF4P23510 183 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 CDKN1AP38936 164 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 SSR4P51571 173 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 BIDP55957 195 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 RPL19P84098 196 aaKnown RBP9.25□□□□□ -0.93
USP3-206ENST00000558157 FOXC1Q12948 553 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 ASCL4Q6XD76 172 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 TCTEX1D1Q8N7M0 179 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 ZNF709Q8N972 641 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 OR4F5Q8NH21 305 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 ST8SIA1Q92185 356 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 APH1AQ96BI3 265 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 OR4F4Q96R69 305 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 VPS25Q9BRG1 176 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 SAMD10Q9BYL1 202 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 WDR61Q9GZS3 305 aaKnown RBP9.25□□□□□ -0.93
USP3-206ENST00000558157 MED29Q9NX70 200 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 KLRF1Q9NZS2 232 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 TAAR3PQ9P1P4 343 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 TP53TG3Q9ULZ0 132 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 ANKUB1A6NFN9 424 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 DIRC3C9JPN6 131 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 NDUFS8O00217 210 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 SLC33A1O00400 549 aaPredicted RBP9.25□□□□□ -0.93
USP3-206ENST00000558157 PDE6DO43924 150 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 RAC2P15153 192 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 PTGDSP41222 190 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 LHX2P50458 406 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 RHOGP84095 191 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 RNF151Q2KHN1 245 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 SIGLECL1Q8N7X8 197 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 METTL7AQ9H8H3 244 aa9.25□□□□□ -0.93
USP3-206ENST00000558157 TRBV9A0A0B4J1U6 114 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 SERF1AO75920 110 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 IGHG1P01857 330 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 SPINK2P20155 84 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 CLRN1P58418 232 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 LINC00310P59036 64 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 WDFY1Q8IWB7 410 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 STARD4Q96DR4 205 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 LYZL4Q96KX0 146 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 ALKBH4Q9NXW9 302 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 CHCHD2Q9Y6H1 151 aaPredicted RBP9.24□□□□□ -0.93
USP3-206ENST00000558157 PCNX3Q9H6A9 2034 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 SAA2-SAA4A0A096LPE2 208 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 IGHV1-69-2A0A0G2JMI3 117 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 A0A1B0GUS0 222 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 TRAPPC6AO75865 159 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 WNT2P09544 360 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 IL11P20809 199 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 ZNF468Q5VIY5 522 aaPredicted RBP9.24□□□□□ -0.93
USP3-206ENST00000558157 PRAMEF20Q5VT98 475 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 RPP25LQ8N5L8 163 aaKnown RBP9.24□□□□□ -0.93
USP3-206ENST00000558157 Q8N976 141 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 PSMF1Q92530 271 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 TAF15Q92804 592 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP3-206ENST00000558157 SMIM12Q96EX1 92 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 IL36GQ9NZH8 169 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 MRPL27Q9P0M9 148 aaKnown RBP9.24□□□□□ -0.93
USP3-206ENST00000558157 DOCK10Q96BY6 2186 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 AKAP13Q12802 2813 aa9.24□□□□□ -0.93
USP3-206ENST00000558157 CBY3A6NI87 242 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 ZNF814B7Z6K7 855 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 WISP1O95388 367 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 FAHP16930 419 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 WT1P19544 449 aaPredicted RBP9.23□□□□□ -0.93
USP3-206ENST00000558157 S100GP29377 79 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 CARD18P57730 90 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 TMEM267Q0VDI3 215 aaPredicted RBP9.23□□□□□ -0.93
USP3-206ENST00000558157 SLC25A47Q6Q0C1 308 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 ZNF295-AS1Q8N0V1 137 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 SGMS2Q8NHU3 365 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 PIGLQ9Y2B2 252 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 KIAA1324LA8MWY0 1029 aaPredicted RBP9.23□□□□□ -0.93
USP3-206ENST00000558157 RER1O15258 196 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 PDCD6O75340 191 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 ZNF253O75346 499 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 ZNF205O95201 554 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 GPX1P07203 203 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 CCL3P10147 92 aa9.23□□□□□ -0.93
USP3-206ENST00000558157 CD33P20138 364 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms