RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 A0A1W2PPI3 338 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 SERPINE3A8MV23 424 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 YPEL1O60688 119 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 MDKP21741 143 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-217ENST00000555116 PPP1CCP36873 323 aaKnown RBP11.41□□□□□ -0.58
SHMT2-217ENST00000555116 LY6G6FQ5SQ64 297 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 CCDC144NLQ6NUI1 221 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 Q6ZSV7 163 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 NOXA1Q86UR1 476 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 TMEM219Q86XT9 240 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 OR4F5Q8NH21 305 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 GPX8Q8TED1 209 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 ST6GALNAC6Q969X2 333 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 YPEL2Q96QA6 119 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 OR51J1Q9H342 316 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 TAS2R8Q9NYW2 309 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 ELF5Q9UKW6 265 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-217ENST00000555116 MGAT4AQ9UM21 535 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 MMP24Q9Y5R2 645 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 DNHD1Q96M86 4753 aa11.41□□□□□ -0.58
SHMT2-217ENST00000555116 SULT1C2O00338 296 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 SCGNO76038 276 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 FCGR3AP08637 254 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 CSF1P09603 554 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 SCTP09683 121 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 BRS3P32247 399 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 SSBP1Q04837 148 aaKnown RBP11.4□□□□□ -0.58
SHMT2-217ENST00000555116 ZNF816Q0VGE8 651 aaPredicted RBP11.4□□□□□ -0.58
SHMT2-217ENST00000555116 FCN2Q15485 313 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 CDNFQ49AH0 187 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 FBLN7Q53RD9 439 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 FAAP20Q6NZ36 180 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 IL1F10Q8WWZ1 152 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 RAB18Q9NP72 206 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 FLVCR2Q9UPI3 526 aa11.4□□□□□ -0.58
SHMT2-217ENST00000555116 PEX14O75381 377 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 TSPAN9O75954 239 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 CD24P25063 80 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 FAUP35544 74 aaKnown RBP11.4□□□□□ -0.59
SHMT2-217ENST00000555116 RAB7AP51149 207 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 ARHGDIBP52566 201 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 ZNF137PP52743 207 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 IFITM2Q01629 132 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 ARL6IP1Q15041 203 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 OR8H3Q8N146 312 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 OR4C16Q8NGL9 310 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 GIMAP1Q8WWP7 306 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 CFHR4Q92496 578 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 C16orf95Q9H693 158 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 PITPNC1Q9UKF7 332 aa11.4□□□□□ -0.59
SHMT2-217ENST00000555116 IGKV1-6A0A0C4DH72 117 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 MEIS3P1A6NDR6 274 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 FAM90A9PA6NNJ1 464 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 TRDCB7Z8K6 153 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 HSD17B6O14756 317 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 TIMM23O14925 209 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 LPLP06858 475 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 GSTP1P09211 210 aaKnown RBP11.39□□□□□ -0.59
SHMT2-217ENST00000555116 MRPS15P82914 257 aaKnown RBP11.39□□□□□ -0.59
SHMT2-217ENST00000555116 ARFRP1Q13795 201 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 ZNF260Q3ZCT1 412 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 DRAM1Q8N682 238 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 SCPEP1Q9HB40 452 aa11.39□□□□□ -0.59
SHMT2-217ENST00000555116 A0A1B0GUS0 222 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 PRAF2O60831 178 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 RGS11O94810 467 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 C1QBP02746 253 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 GAPDHP04406 335 aaKnown RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 IL3RAP26951 378 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 HABP2Q14520 560 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 THNSL2Q86YJ6 484 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 ODF3L1Q8IXM7 274 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 BEST4Q8NFU0 473 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 OR11H7Q8NGC8 314 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 LINC01006Q8NI28 216 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 ABHD14AQ9BUJ0 271 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 PARP12Q9H0J9 701 aaKnown RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 BEX1Q9HBH7 125 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 OR1A1Q9P1Q5 309 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 ZNF230Q9UIE0 474 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 IGHV1-3A0A0C4DH29 117 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 CLPSL1A2RUU4 121 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 TMEM235A6NFC5 223 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 ARPC1BO15143 372 aaKnown RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 NDUFB6O95139 128 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 AKAIN1P0CW23 69 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 RCVRNP35243 200 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 REG1BP48304 166 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 ACTBP60709 375 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 HERPUD1Q15011 391 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 SRSF7Q16629 238 aaKnown RBP eCLIP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 PNLIPRP3Q17RR3 467 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 Q6ZS49 121 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 C3orf56Q8N813 242 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 OR4D10Q8NGI6 311 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 OR4A4PQ8NGN8 299 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 RTN4IP1Q8WWV3 396 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 MAFIPQ8WZ33 124 aa11.38□□□□□ -0.59
SHMT2-217ENST00000555116 RANBP3Q9H6Z4 567 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-217ENST00000555116 SLC23A1Q9UHI7 598 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms