RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 LINC00574Q9H8X3 128 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 CACNG5Q9UF02 275 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 PPIAL4AQ9Y536 164 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 MMP24Q9Y5R2 645 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 DSCAMO60469 2012 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 GPR12P47775 334 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 Q6ZRM9 215 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 FGFRL1Q8N441 504 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 TMEM106BQ9NUM4 274 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 GAB2Q9UQC2 676 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 SESN1Q9Y6P5 492 aa21.82■■□□□ 1.08
CCDC88C-205ENST00000553403 PCNX1Q96RV3 2341 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 FAM24AA6NFZ4 105 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 ZNF729A6NN14 1252 aaPredicted RBP21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 CHST1O43916 411 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 SWI5Q1ZZU3 235 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 Q3ZCU0 254 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 RAB40CQ96S21 281 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 WFDC1Q9HC57 220 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 GFOD1Q9NXC2 390 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 COA4Q9NYJ1 87 aa21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 CISD1Q9NZ45 108 aaKnown RBP21.81■■□□□ 1.08
CCDC88C-205ENST00000553403 FAM157CP0CG43 387 aa21.8■■□□□ 1.08
CCDC88C-205ENST00000553403 RAB7AP51149 207 aa21.8■■□□□ 1.08
CCDC88C-205ENST00000553403 NHLH2Q02577 135 aa21.8■■□□□ 1.08
CCDC88C-205ENST00000553403 SPAG16Q8N0X2 631 aa21.8■■□□□ 1.08
CCDC88C-205ENST00000553403 TMEM252Q8N6L7 170 aa21.8■■□□□ 1.08
CCDC88C-205ENST00000553403 RAI1Q7Z5J4 1906 aaPredicted RBP21.8■■□□□ 1.08
CCDC88C-205ENST00000553403 CACNA1DQ01668 2161 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 IGSF23A1L1A6 192 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 PLAUP00749 431 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 FGF2P09038 288 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 CAV2P51636 162 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 BTNL3Q6UXE8 466 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 CLEC9AQ6UXN8 241 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 LAMP3Q9UQV4 416 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 C17orf98A8MV24 154 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 RAMP3O60896 148 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 CLDN14O95500 239 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 P0C879 139 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 BRWD1-AS2P59051 145 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 BAXQ07812 192 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 CDSNQ15517 529 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 TCF23Q7RTU1 214 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 CD300LFQ8TDQ1 290 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 IDI2-AS1Q9NZ38 188 aa21.79■■□□□ 1.08
CCDC88C-205ENST00000553403 hADV38S2A0JD32 116 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 FAM90A26D6RGX4 464 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 TNFRSF13BO14836 293 aaPredicted RBP21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 TMPRSS2O15393 492 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 SIAH2O43255 324 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 TMEM50AO95807 157 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 PAX9P55771 341 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 MEF2CQ06413 473 aaPredicted RBP21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 IZUMO4Q1ZYL8 232 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 CCL17Q92583 94 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 TAS2R3Q9NYW6 316 aa21.78■■□□□ 1.08
CCDC88C-205ENST00000553403 A8MXK9 166 aa21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 DUTP33316 252 aaKnown RBP21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 RPL23AP62750 156 aaKnown RBP21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 ZNF816Q0VGE8 651 aaPredicted RBP21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 ZNF672Q499Z4 452 aaPredicted RBP21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 SAT2Q96F10 170 aaPredicted RBP21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 GINS3Q9BRX5 216 aa21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 TMEM204Q9BSN7 226 aa21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 IFI27L2Q9H2X8 130 aa21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 SLC25A10Q9UBX3 287 aaPredicted RBP21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 LINC00312Q9Y6C7 94 aa21.77■■□□□ 1.08
CCDC88C-205ENST00000553403 LINC00473A8K010 186 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 TOR1AO14656 332 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 OMGP23515 440 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 LOXP28300 417 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 SULT1A2P50226 295 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 ZNF436-AS1Q8NC38 126 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 LPAR3Q9UBY5 353 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 HELZ2Q9BYK8 2649 aaKnown RBP21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 ARID1AO14497 2285 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 ICE1Q9Y2F5 2266 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 SPTA1P02549 2419 aa21.76■■□□□ 1.07
CCDC88C-205ENST00000553403 SYNGR2O43760 224 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 S1PR2O95136 353 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 NXPH3O95157 252 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 OR2B11Q5JQS5 317 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 OR10A7Q8NGE5 316 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 ABHD14AQ9BUJ0 271 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 WSB1Q9Y6I7 421 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 RAB29O14966 203 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 PROP1O75360 226 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 SEC11BP0C7V7 166 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 NDUFB7P17568 137 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 ZNF134P52741 427 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 TFF3Q07654 80 aa21.75■■□□□ 1.07
CCDC88C-205ENST00000553403 IGHV1-69-2A0A0G2JMI3 117 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 TAS2R30P59541 319 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 ZNF266Q14584 549 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 ODF3L1Q8IXM7 274 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 MUC15Q8N387 334 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 OR1S2Q8NGQ3 325 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 SMIM8Q96KF7 97 aa21.74■■□□□ 1.07
CCDC88C-205ENST00000553403 TANC2Q9HCD6 1990 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms