RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 FAM166AQ6J272 317 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 DRAM1Q8N682 238 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 NUDT16L1Q9BRJ7 211 aaKnown RBP12.77□□□□□ -0.37
CUX1-214ENST00000550008 ZNF835Q9Y2P0 537 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 NPTNQ9Y639 398 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 C5orf42Q9H799 3197 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 MGST3O14880 152 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 TRAT1Q6PIZ9 186 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 CORO2AQ92828 525 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 PARP11Q9NR21 331 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 LOC105371267A0A1B0GV96 52 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 PHOX2AO14813 284 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 CHRNB4P30926 498 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 HGFACQ04756 655 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 FABP9Q0Z7S8 132 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 VMA21Q3ZAQ7 101 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 HARBI1Q96MB7 349 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 TOLLIPQ9H0E2 274 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 TAS2R45P59539 299 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 LINC00596Q86U02 117 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 CYB561D1Q8N8Q1 229 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 ABHD14AQ9BUJ0 271 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 SEC11CQ9BY50 192 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 PTPRQQ9UMZ3 2332 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 S1PR2O95136 353 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 CRYBA1P05813 215 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 CCL1P22362 96 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 ZNF880Q6PDB4 577 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 MIOXQ9UGB7 285 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 PAGE4O60829 102 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 ADH4P08319 380 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 FOXF2Q12947 444 aa12.76□□□□□ -0.37
CUX1-214ENST00000550008 HLA-GP17693 338 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 ORM2P19652 201 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 OR4C12Q96R67 309 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 SLC25A10Q9UBX3 287 aaPredicted RBP12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A10PA6NDY2 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A18PA6NE21 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A16PA6NEW6 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A20PA6NIJ5 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A8PA6NJQ4 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A7PA6NKC0 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A22PA8MWA6 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A12PA8MX19 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A5PA8MXJ8 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A23PA8MXZ1 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 LDLRAD4O15165 306 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 RBP4P02753 201 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 OR4A8P0C604 315 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM87AP0C7U9 286 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A15PP0C7V4 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A13PP0C7W8 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A14PP0C7W9 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM90A24PP0C7X0 464 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 RPL11P62913 178 aaKnown RBP12.75□□□□□ -0.37
CUX1-214ENST00000550008 TMEM241Q24JQ0 296 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FAM78BQ5VT40 261 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 ATRAIDQ6UW56 229 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 BIVMQ86UB2 503 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 RARRES2Q99969 163 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 LPAR2Q9HBW0 351 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 H3BQ15 152 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 LILRA1O75019 489 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 FBP1P09467 338 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 TNXAQ16473 311 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 RNF151Q2KHN1 245 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 RNF126Q9BV68 326 aa12.75□□□□□ -0.37
CUX1-214ENST00000550008 GAR1Q9NY12 217 aaKnown RBP12.75□□□□□ -0.37
CUX1-214ENST00000550008 C12orf77C9JDV5 145 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 H0Y8G0 127 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 CDX4O14627 284 aaPredicted RBP12.74□□□□□ -0.37
CUX1-214ENST00000550008 ZG16O60844 167 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 CTSSP25774 331 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 GFRA1P56159 465 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 DLK1P80370 383 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 BLNKQ8WV28 456 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 BORCS7Q96B45 105 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 LAMA3Q16787 3333 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 CLDN34H7C241 214 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 GAPDHP04406 335 aaKnown RBP12.74□□□□□ -0.37
CUX1-214ENST00000550008 FGF2P09038 288 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 ERVFC1-1P60608 527 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 NCMAPQ5T1S8 102 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 FAM89BQ8N5H3 189 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 ABHD17AQ96GS6 310 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 IGHV3-48P01763 117 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 ZNF66Q6ZN08 573 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 TGIF2LYQ8IUE0 185 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 TGIF2LXQ8IUE1 241 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 LINC00518Q8N0U6 118 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 TMEM56Q96MV1 263 aa12.74□□□□□ -0.37
CUX1-214ENST00000550008 RALYQ9UKM9 306 aaKnown RBP12.74□□□□□ -0.37
CUX1-214ENST00000550008 NCOR2Q9Y618 2525 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PPIAL4EA0A075B759 164 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 IGSF23A1L1A6 192 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PPIAL4DF5H284 164 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 LY86O95711 162 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PPIAL4FP0DN26 164 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 MMP9P14780 707 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 NTF3P20783 257 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms