RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 OR51M1Q9H341 326 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 MS4A5Q9H3V2 200 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 FOXJ2Q9P0K8 574 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 DLL1O00548 723 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 C10orf126Q8N4M7 172 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 GPR82Q96P67 336 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 IGHV5-10-1A0A0J9YXX1 117 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 IGHV3-48P01763 117 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 AGAP20933 346 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 INO80CQ6PI98 192 aaPredicted RBP13.35□□□□□ -0.27
CHD4-210ENST00000544040 TIMP4Q99727 224 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 TMEM56-RWDD3S4R434 201 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 HLA-DRB1P01911 266 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 RND2P52198 227 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 PSG4Q00888 419 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 TAF15Q92804 592 aaKnown RBP eCLIP13.35□□□□□ -0.27
CHD4-210ENST00000544040 TLNRD1Q9H1K6 362 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 TMEM160Q9NX00 188 aa13.35□□□□□ -0.27
CHD4-210ENST00000544040 SSBP3Q9BWW4 388 aaPredicted RBP13.35□□□□□ -0.27
CHD4-210ENST00000544040 C16orf97H3BN30 126 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 ERVH48-1M5A8F1 160 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 CFDP00746 253 aaPredicted RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 TRGC1P0CF51 173 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 UNC119Q13432 240 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 GPR146Q96CH1 333 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 TMEM222Q9H0R3 208 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 YBX2Q9Y2T7 364 aaKnown RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 CTAG1AP78358 180 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 ZNF56Q15929 161 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 CCDC144NLQ6NUI1 221 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 DDB2Q92466 427 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 TTTY12Q9BZ98 90 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 TBL2Q9Y4P3 447 aaKnown RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 TMEM229AB2RXF0 380 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 MPDU1O75352 247 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 PGLYRP1O75594 196 aaPredicted RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 IL4P05112 153 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 CIRBPQ14011 172 aaKnown RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 VKORC1L1Q8N0U8 176 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 TNFSF14O43557 240 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 IGKV3-20P01619 116 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 P2RY4P51582 365 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 GGTLC2Q14390 218 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 CEACAM21Q3KPI0 293 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 C8orf82Q6P1X6 216 aaPredicted RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 SELENOHQ8IZQ5 122 aaKnown RBP13.34□□□□□ -0.27
CHD4-210ENST00000544040 A0A1W2PPV9 198 aa13.34□□□□□ -0.27
CHD4-210ENST00000544040 LNP1A1A4G5 178 aa13.33□□□□□ -0.27
CHD4-210ENST00000544040 RND3P61587 244 aa13.33□□□□□ -0.27
CHD4-210ENST00000544040 B4E171 279 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 SMIM13P0DJ93 91 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 TGIF1Q15583 401 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 ERASQ7Z444 233 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 ZNF721Q8TF20 911 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 APOBEC4Q8WW27 367 aaKnown RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 DSPPQ9NZW4 1301 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 CACNA1SQ13698 1873 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 MYH14Q7Z406 1995 aaKnown RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 C7orf66A4D0T2 115 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 PSMB11A5LHX3 300 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 CCL21O00585 134 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 ZG16O60844 167 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 CA11O75493 328 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 GMPPAQ96IJ6 420 aaPredicted RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 QTRT1Q9BXR0 403 aaKnown RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 PLCH1Q4KWH8 1693 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 TOGARAM1Q9Y4F4 1720 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 C1QAP02745 245 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 GAPDHP04406 335 aaKnown RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 JOSD1Q15040 202 aaPredicted RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 UNQ5815/PRO19632Q6UWF5 114 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 ST6GALNAC6Q969X2 333 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 WNT10AQ9GZT5 417 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 GDF9O60383 454 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 HLA-DQB1P01920 261 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 HOXD4P09016 255 aaPredicted RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 GPR6P46095 362 aaPredicted RBP13.33□□□□□ -0.28
CHD4-210ENST00000544040 FHITP49789 147 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 OR10AG1Q8NH19 301 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 SMDT1Q9H4I9 107 aa13.33□□□□□ -0.28
CHD4-210ENST00000544040 PRF1P14222 555 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 PEBP1P30086 187 aaKnown RBP13.32□□□□□ -0.28
CHD4-210ENST00000544040 CCL27Q9Y4X3 112 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 TRAV8-6A0A0B4J262 113 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 PTP4A3O75365 173 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 CACNG7P62955 275 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 C18orf15Q96N68 181 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 CISD1Q9NZ45 108 aaKnown RBP13.32□□□□□ -0.28
CHD4-210ENST00000544040 CELA2AP08217 269 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 UCP2P55851 309 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 FGF12P61328 243 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 RPL8P62917 257 aaKnown RBP13.32□□□□□ -0.28
CHD4-210ENST00000544040 FGFRL1Q8N441 504 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 GGACTQ9BVM4 153 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 PPP1R3EQ9H7J1 279 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 ZNF430Q9H8G1 570 aaPredicted RBP13.32□□□□□ -0.28
CHD4-210ENST00000544040 TMEM262E9PQX1 116 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 EGR1P18146 543 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 FCARP24071 287 aa13.32□□□□□ -0.28
CHD4-210ENST00000544040 TFF2Q03403 129 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms