RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PLA1AQ53H76 456 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 RPL39P5Q59GN2 51 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 ZNF645Q8N7E2 425 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 OR4C16Q8NGL9 310 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 SSMEM1Q8WWF3 244 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 MOB3AQ96BX8 217 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 SSX3Q99909 188 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 CCDC32Q9BV29 185 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 DPAGT1Q9H3H5 408 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 ABCB10Q9NRK6 738 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 A0A0A6YYJ9 748 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 A0A1W2PPI3 338 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 DISC1C4P0D8 188 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 PROP1O75360 226 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 IFNA2P01563 188 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 AMY2AP04746 511 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 IL7P13232 177 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 FAUP35544 74 aaKnown RBP13.8□□□□□ -0.2
LIG1-204ENST00000542460 ZNF57Q68EA5 555 aaPredicted RBP13.8□□□□□ -0.2
LIG1-204ENST00000542460 MOB3BQ86TA1 216 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 SECTM1Q8WVN6 248 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 SDHAF2Q9NX18 166 aa13.8□□□□□ -0.2
LIG1-204ENST00000542460 DNHD1Q96M86 4753 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 TIMM23O14925 209 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 HOXA3O43365 443 aaPredicted RBP13.79□□□□□ -0.2
LIG1-204ENST00000542460 ZNF735P0CB33 412 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 RAB13P51153 203 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 HILS1P60008 231 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 MSMO1Q15800 293 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 FAAP20Q6NZ36 180 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 OR56B4Q8NH76 319 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 OR5R1Q8NH85 324 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 JMJD8Q96S16 334 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 SLC5A7Q9GZV3 580 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 POMT1Q9Y6A1 747 aa13.79□□□□□ -0.2
LIG1-204ENST00000542460 BTBD17A6NE02 478 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 OR5H14A6NHG9 310 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 TCF21O43680 179 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 IGHV4-59P01825 116 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 HABP2Q14520 560 aaPredicted RBP13.78□□□□□ -0.2
LIG1-204ENST00000542460 SCGB2B2Q4G0G5 96 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 AADACL3Q5VUY0 350 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 LPCAT3Q6P1A2 487 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 LHFPL1Q86WI0 220 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 TMEM86BQ8N661 226 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 DRAM1Q8N682 238 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 TERB2Q8NHR7 220 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 PIFOQ8TCI5 191 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 CFHR4Q92496 578 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 BORCS5Q969J3 196 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 PRRT1Q99946 306 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 MRPL20Q9BYC9 149 aaKnown RBP13.78□□□□□ -0.2
LIG1-204ENST00000542460 HRASLSQ9HDD0 168 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 CCL28Q9NRJ3 127 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 MCUBQ9NWR8 336 aa13.78□□□□□ -0.2
LIG1-204ENST00000542460 H3BUX3 64 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 M0R1X1 148 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 IGLV2-14P01704 120 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 CT45A6P0DMU7 189 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 CT45A5P0DMU8 189 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 CT45A7P0DMV0 189 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 UCP3P55916 312 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 PRIMA1Q86XR5 153 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 ZBTB34Q8NCN2 500 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 OR51S1Q8NGJ8 323 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 AKR1E2Q96JD6 320 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 NABP2Q9BQ15 211 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 SCP2D1Q9UJQ7 156 aa13.77□□□□□ -0.21
LIG1-204ENST00000542460 JMJD1CQ15652 2540 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 FAM90A9PA6NNJ1 464 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 FAM106CPP0CH98 169 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 CD1BP29016 333 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 GNRHRP30968 328 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 SLC9A3R2Q15599 337 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 THNSL2Q86YJ6 484 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 C5orf30Q96GV9 206 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 FXYD6Q9H0Q3 95 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 SLC2A8Q9NY64 477 aa13.76□□□□□ -0.21
LIG1-204ENST00000542460 DNAJC9-AS1A6NH13 148 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 CLDN34H7C241 214 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 ZNF818PQ6ZRF7 136 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 ZDHHC22Q8N966 263 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 DRAXINQ8NBI3 349 aaPredicted RBP13.75□□□□□ -0.21
LIG1-204ENST00000542460 CAPSLQ8WWF8 208 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 ESM1Q9NQ30 184 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 PITPNC1Q9UKF7 332 aa13.75□□□□□ -0.21
LIG1-204ENST00000542460 IGHV3-72A0A0B4J1Y9 119 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 NAP1L6A6NFF2 107 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 CENPXA8MT69 81 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 SNRNP70P08621 437 aaKnown RBP13.74□□□□□ -0.21
LIG1-204ENST00000542460 CD24P25063 80 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 MC5RP33032 325 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 DUTP33316 252 aaKnown RBP13.74□□□□□ -0.21
LIG1-204ENST00000542460 ECI1P42126 302 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 THBS3P49746 956 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 IDO2Q6ZQW0 420 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 CMTM1Q8IZ96 169 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 SLC38A6Q8IZM9 456 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 ZNF383Q8NA42 475 aa13.74□□□□□ -0.21
LIG1-204ENST00000542460 BVESQ8NE79 360 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms