RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 HIST1H1AQ02539 215 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 AESQ08117 197 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF793Q6ZN11 406 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 LIAT1Q6ZQX7 453 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 OR5D14Q8NGL3 314 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 NEU4Q8WWR8 484 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-214ENST00000540539 GALMQ96C23 342 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 HARBI1Q96MB7 349 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 SDF2Q99470 211 aa8.06□□□□□ -1.12
CLIP1-214ENST00000540539 A0A087X0K7 114 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 LOC107986453A0A1B0GWG9 222 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 FEZF1A0PJY2 475 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 FBLL1A6NHQ2 334 aaKnown RBP8.05□□□□□ -1.12
CLIP1-214ENST00000540539 H3BUT2 72 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 MPIG6BO95866 241 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 TNFP01375 233 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SERPINE2P07093 398 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 DBIP07108 87 aaKnown RBP8.05□□□□□ -1.12
CLIP1-214ENST00000540539 FAM87AP0C7U9 286 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SRD5A2P31213 254 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 MDH2P40926 338 aaKnown RBP8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SSR2P43308 183 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF324BQ6AW86 544 aaPredicted RBP8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SLC25A34Q6PIV7 304 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SPATA12Q7Z6I5 190 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 OTOSQ8NHW6 89 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 WDR61Q9GZS3 305 aaKnown RBP8.05□□□□□ -1.12
CLIP1-214ENST00000540539 COPS7AQ9UBW8 275 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 B3GALT1Q9Y5Z6 326 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 TRPM6Q9BX84 2022 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 IGKV1D-8A0A087WSZ0 117 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 C19orf67A6NJJ6 358 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SSTR5P35346 364 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 PSMB3P49720 205 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF141Q15928 474 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 ACSF3Q4G176 576 aaPredicted RBP8.05□□□□□ -1.12
CLIP1-214ENST00000540539 C22orf39Q6P5X5 142 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 Q6ZSR6 202 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 MARCH3Q86UD3 253 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 OR5A1Q8NGJ0 315 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 GATAD1Q8WUU5 269 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 RAB1CQ92928 201 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 LHX4Q969G2 390 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 AP1S3Q96PC3 154 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 ULBP2Q9BZM5 246 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 COMMD5Q9GZQ3 224 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 FBLN5Q9UBX5 448 aa8.05□□□□□ -1.12
CLIP1-214ENST00000540539 SNURFLB1AK76 121 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 BGLAPP02818 100 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 NPPCP23582 126 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 ECI1P42126 302 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 IER3P46695 156 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 TCEA2Q15560 299 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 MRPL54Q6P161 138 aaKnown RBP8.04□□□□□ -1.12
CLIP1-214ENST00000540539 SLC23A3Q6PIS1 610 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 FOXI2Q6ZQN5 318 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 RNF144BQ7Z419 303 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 SLC22A24Q8N4F4 322 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF418Q8TF45 676 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-214ENST00000540539 MBD6Q96DN6 1003 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 APOOQ9BUR5 198 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 BANF2Q9H503 90 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 GP6Q9HCN6 339 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 CES1P1Q9UKY3 287 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 UFC1Q9Y3C8 167 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 PCNX3Q9H6A9 2034 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 A0A1W2PP11 408 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 BNIP3LO60238 219 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 IGFBP2P18065 325 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 PLA2G5P39877 138 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 RPS4XP62701 263 aaKnown RBP8.04□□□□□ -1.12
CLIP1-214ENST00000540539 CCL7P80098 99 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 TBR1Q16650 682 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 CXorf66Q5JRM2 361 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-214ENST00000540539 OR10J3Q5JRS4 329 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 PLCXD3Q63HM9 321 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 EBLN2Q6P2I7 272 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 TPRG1Q6ZUI0 275 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF114Q8NC26 417 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 OR10AG1Q8NH19 301 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 SSC4DQ8WTU2 575 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 TSKUQ8WUA8 353 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 DAZLQ92904 295 aaKnown RBP8.04□□□□□ -1.12
CLIP1-214ENST00000540539 SPSB4Q96A44 273 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 LIME1Q9H400 295 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 DECR2Q9NUI1 292 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 ERG28Q9UKR5 140 aa8.04□□□□□ -1.12
CLIP1-214ENST00000540539 MUC22E2RYF6 1773 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 PGPEP1LA6NFU8 196 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 B5MCH6 92 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 OTX2P32243 289 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 TNFRSF4P43489 277 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 THBS3P49746 956 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 EGR4Q05215 589 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 GAGE5Q13069 117 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 GAGE6Q13070 117 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 MLF2Q15773 248 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 COX19Q49B96 90 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 PHLDA2Q53GA4 152 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 TMEM196Q5HYL7 178 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms