RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ADTRPQ96IZ2 230 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 RSG1Q9BU20 258 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 TRAV38-1A0A0B4J264 116 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF727A8MUV8 499 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 RAB29O14966 203 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 TMPRSS2O15393 492 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 MLNRO43193 412 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 S1PR2O95136 353 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 NQO2P16083 231 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 CCL17Q92583 94 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 JPT1Q9UK76 154 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 ZDHHC8Q9ULC8 765 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 SLC25A15Q9Y619 301 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 NDUFB3O43676 98 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 HPRT1P00492 218 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 CCL8P80075 99 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 FFAR4Q5NUL3 377 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 IGFL2Q6UWQ7 119 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 Q6ZS92 163 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 WDR86Q86TI4 376 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 NPIPB11E5RHQ5 1161 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ETV3LQ6ZN32 361 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 SSX8Q7RTT4 187 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 C15orf54Q8N8G6 183 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ZNRF1Q8ND25 227 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 URGCP-MRPS24S4R325 110 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ADAMTS20P59510 1910 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 FGF8P55075 233 aaPredicted RBP9.06□□□□□ -0.96
CLIP1-213ENST00000540338 OR2B8PP59922 312 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ERVK11-1P61568 191 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 FAM90A1Q86YD7 464 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 OR10X1Q8NGY0 326 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ABHD17AQ96GS6 310 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 OR4C12Q96R67 309 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 CCL13Q99616 98 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 GAL3ST2Q9H3Q3 398 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 CALYQ9NYX4 217 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 OTOGLQ3ZCN5 2332 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 DNASE2O00115 360 aaPredicted RBP9.06□□□□□ -0.96
CLIP1-213ENST00000540338 MT-ND4LP03901 98 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 TFF1P04155 84 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 S100A2P29034 98 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 LRRC10Q5BKY1 277 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF561Q8N587 486 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 PRR7Q8TB68 274 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 NANPQ8TBE9 248 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 DCTN5Q9BTE1 182 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 ARV1Q9H2C2 271 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 SAP30LQ9HAJ7 183 aa9.06□□□□□ -0.96
CLIP1-213ENST00000540338 TIMP3P35625 211 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 ADIRFQ15847 76 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 GCSAMQ8N6F7 178 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 OR10G4Q8NGN3 311 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 OR10G9Q8NGN4 311 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 OR10G7Q8NGN6 311 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 HEATR1Q9H583 2144 aaKnown RBP9.05□□□□□ -0.96
CLIP1-213ENST00000540338 TPRP12270 2363 aaKnown RBP9.05□□□□□ -0.96
CLIP1-213ENST00000540338 HMGB3O15347 200 aaKnown RBP9.05□□□□□ -0.96
CLIP1-213ENST00000540338 DAOP14920 347 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 IL3RAP26951 378 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 RTP5Q14D33 572 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 KHDC3LQ587J8 217 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 TMEM41BQ5BJD5 291 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 KIAA2026Q5HYC2 2103 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 MRPL41Q8IXM3 137 aaKnown RBP9.05□□□□□ -0.96
CLIP1-213ENST00000540338 DIRC2Q96SL1 478 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 ABHD14AQ9BUJ0 271 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 C17orf98A8MV24 154 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 CD40P25942 277 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF880Q6PDB4 577 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 OR4F5Q8NH21 305 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 OR4F4Q96R69 305 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 SMIM7Q9BQ49 75 aa9.05□□□□□ -0.96
CLIP1-213ENST00000540338 MBNL3Q9NUK0 354 aaKnown RBP9.05□□□□□ -0.96
CLIP1-213ENST00000540338 A0A1W2PPE3 182 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 MARCH11A6NNE9 402 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 ACAA1P09110 424 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 THBS3P49746 956 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 TLE1Q04724 770 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 DHRS7BQ6IAN0 325 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 LRP11Q86VZ4 500 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 FAM24BQ8N5W8 94 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 FAM169BQ8N8A8 192 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 TAF15Q92804 592 aaKnown RBP eCLIP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 SLC25A22Q9H936 323 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 PLEKHA3Q9HB20 300 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 ZFHX2Q9C0A1 2572 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 ENSAO43768 121 aaKnown RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF737O75373 536 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 GYPAP02724 150 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 IGFL3Q6UXB1 125 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 CORO2AQ92828 525 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 RPUSD4Q96CM3 377 aaKnown RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 COMMD5Q9GZQ3 224 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 TNFSF13O75888 250 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 RPL19P84098 196 aaKnown RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 ISOC2Q96AB3 205 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 RARRES2Q99969 163 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 ELOVL5Q9NYP7 299 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 IL19Q9UHD0 177 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms